View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10810_6 (Length: 397)
Name: NF10810_6
Description: NF10810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10810_6 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 134 - 388
Target Start/End: Original strand, 32793328 - 32793581
Alignment:
| Q |
134 |
ctgtgctagctacctaagttgagtatacactatgcatataccttttcaaaggaattgaataattctaacattataattcataatcatatcaatcaatctt |
233 |
Q |
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| T |
32793328 |
ctgtgctaggtacctgagttgagtatacactatccataaaccttttcaaaggaattgaataattctaacattataattcataatcatatcaatcaatctt |
32793427 |
T |
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| Q |
234 |
tgttgaaaggaaaagacttacaccgaatcttcaaattataaggttggattttcaagtttattttagagagagtaaaccaaaatttgtctgaatgacaagg |
333 |
Q |
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| T |
32793428 |
tgttgaaaggaaaaggcatacaccgaatcttcaaattataaggttggatttccaagtttattttagggagagtagaccaaaatttgtctaaatgac-agg |
32793526 |
T |
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| Q |
334 |
ggagggggtaaacaccatttaaccttaaatggacatttgtttgaaggttgaaaat |
388 |
Q |
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| T |
32793527 |
ggagggggtaaacaccatttaaccctaagtgggcgtttgtttgaaggttgaaaat |
32793581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 8682744 - 8682843
Alignment:
| Q |
30 |
gtgatgacaacaaaacggccaatgaaggcggtggtaaaaatgcaggtggtggcacaaaagtagaggaagtgaagccagcaccacagccagtgaacgagca |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8682744 |
gtgatgacaacaaaacggccaatgaaggcggtggtaaaaatgcaggtggtggctcaaaagtagaggaagtgaagccagcaccacagccagtgaaagagca |
8682843 |
T |
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