View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10810_7 (Length: 340)

Name: NF10810_7
Description: NF10810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10810_7
NF10810_7
[»] chr5 (3 HSPs)
chr5 (171-340)||(27313902-27314058)
chr5 (24-99)||(27314130-27314205)
chr5 (286-330)||(24137650-24137693)
[»] chr6 (4 HSPs)
chr6 (288-335)||(28064681-28064728)
chr6 (208-249)||(10740746-10740787)
chr6 (207-253)||(18792736-18792782)
chr6 (211-253)||(21858213-21858255)
[»] chr3 (2 HSPs)
chr3 (211-278)||(2593010-2593076)
chr3 (207-250)||(29554669-29554712)
[»] chr7 (3 HSPs)
chr7 (305-340)||(11827948-11827983)
chr7 (209-251)||(46964313-46964355)
chr7 (233-278)||(21812626-21812671)
[»] chr4 (2 HSPs)
chr4 (208-251)||(24131938-24131981)
chr4 (209-251)||(16869684-16869726)
[»] scaffold0511 (1 HSPs)
scaffold0511 (207-253)||(11359-11405)
[»] chr2 (1 HSPs)
chr2 (209-251)||(8985748-8985790)
[»] chr1 (1 HSPs)
chr1 (237-278)||(9253288-9253329)
[»] chr8 (1 HSPs)
chr8 (288-335)||(43516173-43516218)


Alignment Details
Target: chr5 (Bit Score: 114; Significance: 9e-58; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 171 - 340
Target Start/End: Complemental strand, 27314058 - 27313902
Alignment:
Q  171 ggttttgggaaaacaacagcggaaaagatgcaaaatgttcaaggaggatcaaacaaagctcttgataccatgttaacaatatatggtttcaatagagaat 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27314058 ggttttgggaaaacaacagcggaaaagatgcaaaatgttcaaggaggatcgaacaaagctcttgataccatgttaacaatatatagtttcaatagagaat 27313959  T
Q  271 aacaaagattactagagaaggttaccagagaatatatatataaaacctaatagactctaaactaataggc 340  Q
    |||||||||||||||             |||||||||||||||||||||||| |||||||||||||||||    
T  27313958 aacaaagattactag-------------agaatatatatataaaacctaataaactctaaactaataggc 27313902  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 27314205 - 27314130
Alignment:
Q  24 aacctgtggaatacaaccagacaactagcaaacttcggcgagataaaacaattcagcgaggggtttgaacagtacg 99  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27314205 aacctatggaatacaaccaggcaactagcaaacttcggcgagataaaacaattcagcgaggggtttgaacagtacg 27314130  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 330
Target Start/End: Complemental strand, 24137693 - 24137650
Alignment:
Q  286 agaaggttaccagagaatatatatataaaacctaatagactctaa 330  Q
    |||||||||  |||||||||||| |||||||||||||||||||||    
T  24137693 agaaggttataagagaatatata-ataaaacctaatagactctaa 24137650  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 288 - 335
Target Start/End: Original strand, 28064681 - 28064728
Alignment:
Q  288 aaggttaccagagaatatatatataaaacctaatagactctaaactaa 335  Q
    |||||||| |||||||||| |||||||||||||| |||||||||||||    
T  28064681 aaggttactagagaatataaatataaaacctaatggactctaaactaa 28064728  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 10740787 - 10740746
Alignment:
Q  208 ttcaaggaggatcaaacaaagctcttgataccatgttaacaa 249  Q
    ||||||||||||||||| | ||||||||||||||||||||||    
T  10740787 ttcaaggaggatcaaaccatgctcttgataccatgttaacaa 10740746  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 253
Target Start/End: Original strand, 18792736 - 18792782
Alignment:
Q  207 gttcaaggaggatcaaacaaagctcttgataccatgttaacaatata 253  Q
    |||||||| ||||| |||||||||||| |||| ||||||||||||||    
T  18792736 gttcaaggcggatcgaacaaagctcttcatacaatgttaacaatata 18792782  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 21858255 - 21858213
Alignment:
Q  211 aaggaggatcaaacaaagctcttgataccatgttaacaatata 253  Q
    |||||||||||||  |||||||||||||||||||||| |||||    
T  21858255 aaggaggatcaaatcaagctcttgataccatgttaactatata 21858213  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 278
Target Start/End: Original strand, 2593010 - 2593076
Alignment:
Q  211 aaggaggatcaaacaaagctcttgataccatgttaacaatatatggtttcaatagagaataacaaaga 278  Q
    |||||||||||||  |||||||  ||| |||||||||||| || ||||||||||||||||||||||||    
T  2593010 aaggaggatcaaaacaagctcta-atatcatgttaacaatctagggtttcaatagagaataacaaaga 2593076  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 29554712 - 29554669
Alignment:
Q  207 gttcaaggaggatcaaacaaagctcttgataccatgttaacaat 250  Q
    |||||||| ||||| ||||||||| |||||||||||||||||||    
T  29554712 gttcaaggtggatcgaacaaagcttttgataccatgttaacaat 29554669  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 340
Target Start/End: Original strand, 11827948 - 11827983
Alignment:
Q  305 tatatataaaacctaatagactctaaactaataggc 340  Q
    ||||||||||||||||| ||||||||||||||||||    
T  11827948 tatatataaaacctaattgactctaaactaataggc 11827983  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 251
Target Start/End: Original strand, 46964313 - 46964355
Alignment:
Q  209 tcaaggaggatcaaacaaagctcttgataccatgttaacaata 251  Q
    ||||||||| |||||| | ||||||||||||||||||||||||    
T  46964313 tcaaggagggtcaaaccacgctcttgataccatgttaacaata 46964355  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 278
Target Start/End: Complemental strand, 21812671 - 21812626
Alignment:
Q  233 tgataccatgttaacaatatatggtttcaatagagaataacaaaga 278  Q
    |||||||||||||||||||||   |||||| |||||||||||||||    
T  21812671 tgataccatgttaacaatataatatttcaaaagagaataacaaaga 21812626  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 251
Target Start/End: Complemental strand, 24131981 - 24131938
Alignment:
Q  208 ttcaaggaggatcaaacaaagctcttgataccatgttaacaata 251  Q
    ||||||| ||||||||  ||||||||||||||||||||||||||    
T  24131981 ttcaaggtggatcaaaacaagctcttgataccatgttaacaata 24131938  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 251
Target Start/End: Complemental strand, 16869726 - 16869684
Alignment:
Q  209 tcaaggaggatcaaacaaagctcttgataccatgttaacaata 251  Q
    ||||||||| |||||| | ||||||||||||||||||||||||    
T  16869726 tcaaggagggtcaaaccacgctcttgataccatgttaacaata 16869684  T

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Target: scaffold0511 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 253
Target Start/End: Complemental strand, 11405 - 11359
Alignment:
Q  207 gttcaaggaggatcaaacaaagctcttgataccatgttaacaatata 253  Q
    |||||||| ||||| |||||||||||| |||| ||||||||||||||    
T  11405 gttcaaggcggatcgaacaaagctcttcatacaatgttaacaatata 11359  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 251
Target Start/End: Complemental strand, 8985790 - 8985748
Alignment:
Q  209 tcaaggaggatcaaacaaagctcttgataccatgttaacaata 251  Q
    ||||||||| |||||| | ||||||||||||||||||||||||    
T  8985790 tcaaggagggtcaaaccacgctcttgataccatgttaacaata 8985748  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 278
Target Start/End: Original strand, 9253288 - 9253329
Alignment:
Q  237 accatgttaacaatatatggtttcaatagagaataacaaaga 278  Q
    ||||||||||||| | | ||||||||||||||||||||||||    
T  9253288 accatgttaacaaaacaaggtttcaatagagaataacaaaga 9253329  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 335
Target Start/End: Complemental strand, 43516218 - 43516173
Alignment:
Q  288 aaggttaccagagaatatatatataaaacctaatagactctaaactaa 335  Q
    |||||||| ||||||||||||||  ||||||||| |||||||||||||    
T  43516218 aaggttactagagaatatatata--aaacctaatggactctaaactaa 43516173  T

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