View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10810_8 (Length: 325)

Name: NF10810_8
Description: NF10810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10810_8
NF10810_8
[»] chr8 (2 HSPs)
chr8 (35-316)||(7195510-7195791)
chr8 (225-264)||(9622088-9622127)
[»] chr4 (5 HSPs)
chr4 (199-264)||(52071522-52071587)
chr4 (234-264)||(31941929-31941959)
chr4 (234-264)||(32000888-32000918)
chr4 (203-265)||(41544634-41544696)
chr4 (224-264)||(36246538-36246578)
[»] chr1 (1 HSPs)
chr1 (227-263)||(27632581-27632617)


Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 35 - 316
Target Start/End: Original strand, 7195510 - 7195791
Alignment:
Q  35 aaattagcctatgctactcgacacaagtctgataatggtgatctagagttcagtcaagagctaagtgagatttgaccaatataattctagtcaggaatcg 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7195510 aaattagcctatgctactcgacacaagtctgataatggtgatctagagttcggtcgagagctaagtgagatttgaccaatataattctagtcaggaatcg 7195609  T
Q  135 aatcatcacaattcattctccttcattattataaatgactaaaatttatgatatttgttctatatagatggtctttgatagctaagagactaccaggacg 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7195610 aatcatcacaattcattctccttcattattataaatgactaaaatttatgatatttgttctatatagatggtctttgatagctaagagactaccaggacg 7195709  T
Q  235 aacagacaatgaaatcaagaactactggaatactaatctgtcaaagaagttacaaaaacagccaacatcatcatcatcattg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7195710 aacagacaatgaaatcaagaactactggaatactaatctgtcaaagaagttacaaaaacagccaacatcatcatcatcattg 7195791  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 264
Target Start/End: Original strand, 9622088 - 9622127
Alignment:
Q  225 taccaggacgaacagacaatgaaatcaagaactactggaa 264  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  9622088 taccaggacgaacagacaatgaaataaagaactactggaa 9622127  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 52071587 - 52071522
Alignment:
Q  199 tagatggtctttgatagctaagagactaccaggacgaacagacaatgaaatcaagaactactggaa 264  Q
    |||||||||| | ||||||   ||||||||||| ||||||||||||||||||||||| || |||||    
T  52071587 tagatggtctctaatagctggaagactaccagggcgaacagacaatgaaatcaagaattattggaa 52071522  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 264
Target Start/End: Original strand, 31941929 - 31941959
Alignment:
Q  234 gaacagacaatgaaatcaagaactactggaa 264  Q
    |||||||||||||||||||||||||||||||    
T  31941929 gaacagacaatgaaatcaagaactactggaa 31941959  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 264
Target Start/End: Original strand, 32000888 - 32000918
Alignment:
Q  234 gaacagacaatgaaatcaagaactactggaa 264  Q
    |||||||||||||||||||||||||||||||    
T  32000888 gaacagacaatgaaatcaagaactactggaa 32000918  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 265
Target Start/End: Original strand, 41544634 - 41544696
Alignment:
Q  203 tggtctttgatagctaagagactaccaggacgaacagacaatgaaatcaagaactactggaat 265  Q
    ||||||||||||||    ||||| ||||| ||||||||||||||||| |||||||| ||||||    
T  41544634 tggtctttgatagcgggaagacttccagggcgaacagacaatgaaattaagaactattggaat 41544696  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 36246538 - 36246578
Alignment:
Q  224 ctaccaggacgaacagacaatgaaatcaagaactactggaa 264  Q
    ||||||||| |||||||||||||||||||||| || |||||    
T  36246538 ctaccaggaagaacagacaatgaaatcaagaattattggaa 36246578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 263
Target Start/End: Complemental strand, 27632617 - 27632581
Alignment:
Q  227 ccaggacgaacagacaatgaaatcaagaactactgga 263  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  27632617 ccaggaagaacagacaatgaaatcaagaactattgga 27632581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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