View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10811_high_1 (Length: 202)
Name: NF10811_high_1
Description: NF10811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10811_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 16645185 - 16645356
Alignment:
| Q |
15 |
atgaaaataaaaccaagaaagagtaatgctaccattgcaaaattcccaagtgtttgcctatgattatccatcatttattttagcctctatgttaggatat |
114 |
Q |
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| T |
16645185 |
atgaaaataaaaccaagaaagagtaatgctaccattgcaaaattcccaagtgtttgcctatgattatccatcattttttttagcctctatgttaggatat |
16645284 |
T |
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| Q |
115 |
tgaagaacttaaatcaagattaagacctacgtgtatatataatagtgcacgctttcttaaaggatatatatt |
186 |
Q |
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| T |
16645285 |
tgaagaacttaaatcaagattaagacctacgtgtatatatagtagtgcacgctatcttaaaggatatatatt |
16645356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 8e-26; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 17 - 135
Target Start/End: Original strand, 1520838 - 1520961
Alignment:
| Q |
17 |
gaaaataaaaccaagaaagagtaatgctaccattgcaaaattcccaagtgtttgcctatgattatccatca-----tttattttagcctctatgttagga |
111 |
Q |
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| T |
1520838 |
gaaaataaaaccaataaagagtaatgctaccattgcaaaactcccaagggtttgcctaagattatccatcattatttttttctttacctctatgttagga |
1520937 |
T |
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| Q |
112 |
tattgaagaacttaaatcaagatt |
135 |
Q |
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| T |
1520938 |
tattgtacaaattaaatcaagatt |
1520961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 1516652 - 1516811
Alignment:
| Q |
17 |
gaaaataaaaccaagaaagagtaatgctaccattgcaaaattcccaagtgtttgcctatgattatccatcatt-----tattttagcctctatg-ttagg |
110 |
Q |
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| T |
1516652 |
gaaaataaaactaacaaagagtaatgctaccattgcaaaactcccaagtgtttgcctaagactatccatcattaattctatatttacctctatgtttagg |
1516751 |
T |
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| Q |
111 |
atattgaagaacttaaatcaagattaagacctacgtgtatatataatagtgcacgctttctt |
172 |
Q |
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| T |
1516752 |
atattgaacaaattaaatcaagattgggagcta--tgtatatatagtagtgcatcctttctt |
1516811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 23087344 - 23087298
Alignment:
| Q |
17 |
gaaaataaaaccaagaaagagtaatgctaccattgcaaaattcccaa |
63 |
Q |
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||||||||||||| |||||| ||||||||||||||||||| ||||| |
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| T |
23087344 |
gaaaataaaaccaccaaagagcaatgctaccattgcaaaatacccaa |
23087298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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