View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10811_low_1 (Length: 508)
Name: NF10811_low_1
Description: NF10811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10811_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 23 - 500
Target Start/End: Original strand, 31246119 - 31246597
Alignment:
| Q |
23 |
aaccttgaagccatagttctacggcgttacccagaaaatattgaagaaatacaggagatgacaacattgagggctgaagctttagcacaaatgggtcgcc |
122 |
Q |
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| T |
31246119 |
aaccttgaagccatagttctgaggcgttatccagaaaatattgaagaaatacaggggatgacaacattgagaactgaagctttagcacaaatgagtcgcc |
31246218 |
T |
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| Q |
123 |
ttaaattgctcatcctgtggaatttgaatttttcaggaaatctcaattttctttctagtcatttggggtatctctgttgggataaatatcctttcacttg |
222 |
Q |
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| T |
31246219 |
ttaaattgctcatgctgtggaatttgaatttctcaggaagtctcaattttctttctagtcatttggggtatctctgttgggataaatatcctttcacttg |
31246318 |
T |
|
| Q |
223 |
tttgccatcaagttttcagccggataatcttgttgaactgatactacctcgtagcaacatcaggcaactatgggagggcacaaaggtactataaacatgg |
322 |
Q |
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| T |
31246319 |
tttgccatcaagtttccagccggataaacttgttgaactggtcctacctcgtagcaacatcaggcaactatgggagggcacaaaggtaatataaacatgg |
31246418 |
T |
|
| Q |
323 |
ttatgagcctttgtttttctttttctgatgaacacataagaagtgtttatctcttaatattccttctttcactacagtttgttaaataaatgaattaaag |
422 |
Q |
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| T |
31246419 |
ttatgagcctttgtttatctttttctgatgaacacataagaagtgtttatctcttaatattccttctttcactacagttagttaaataaatgaattaaag |
31246518 |
T |
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| Q |
423 |
tttaaatatgattattaatttttctcttt-catttatcattgtctgcagcctctacataatttgacacatattcatctc |
500 |
Q |
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| T |
31246519 |
tttaaatatgattattaatttttctctttccatttatcattgtctgcagtgtttacataatttgacacatattgatctc |
31246597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 130; Significance: 4e-67; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 80 - 313
Target Start/End: Original strand, 13610230 - 13610463
Alignment:
| Q |
80 |
atgacaacattgagggctgaagctttagcacaaatgggtcgccttaaattgctcatcctgtggaatttgaatttttcaggaaatctcaattttctttcta |
179 |
Q |
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|||||||||||||||||||||||||||||| | ||| ||||||||||||||||| ||| | |||||||||| ||||||| ||||||||||||||| | |
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| T |
13610230 |
atgacaacattgagggctgaagctttagcaaagatgactcgccttaaattgctcaagctgcgtgatttgaatttctcaggaagtctcaattttctttcaa |
13610329 |
T |
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| Q |
180 |
gtcatttggggtatctctgttgggataaatatcctttcacttgtttgccatcaagttttcagccggataatcttgttgaactgatactacctcgtagcaa |
279 |
Q |
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| T |
13610330 |
gtgaattggggtatctatattgggaaaaatatcctttcacatgtttgccatcaagttttcagccggataaacttgttgaattgatcctacgttctagcaa |
13610429 |
T |
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| Q |
280 |
catcaggcaactatgggagggcacaaaggtacta |
313 |
Q |
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| T |
13610430 |
catcaggcaactatggaagggaacaaaggtacta |
13610463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 415 - 500
Target Start/End: Original strand, 13614278 - 13614364
Alignment:
| Q |
415 |
aattaaagtttaaatatgattattaatttttctctttc-atttatcattgtctgcagcctctacataatttgacacatattcatctc |
500 |
Q |
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|||||| | ||||||||||||||||| |||||||||| | | | ||||||||||||||||| || ||||||||||||||| ||||| |
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| T |
13614278 |
aattaatgcttaaatatgattattaacctttctctttctactgaccattgtctgcagcctcttcacaatttgacacatattgatctc |
13614364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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