View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10812_high_2 (Length: 238)

Name: NF10812_high_2
Description: NF10812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10812_high_2
NF10812_high_2
[»] chr7 (1 HSPs)
chr7 (1-223)||(9798141-9798367)
[»] chr4 (5 HSPs)
chr4 (1-104)||(45175559-45175662)
chr4 (78-173)||(45094818-45094917)
chr4 (10-76)||(45569688-45569755)
chr4 (78-168)||(44668015-44668109)
chr4 (151-223)||(45088473-45088546)
[»] chr1 (1 HSPs)
chr1 (177-223)||(42415560-42415606)


Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9798141 - 9798367
Alignment:
Q  1 cctttagcaccaaatttccaaacccaactacccgcaagtaattatgcagcgatctattacacaaaaagcagcagccttaagttgttcttcaattacagga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9798141 cctttagcaccaaatttccaaacccaactacccgcaagtaattatgcagcgatctattacacaaaaagcagcagccttaagttgttcttcaattacagga 9798240  T
Q  101 tcaaagcaaatctactaacatatcattgttaacttagctacattcttggagaaagacttaatttttctcacaattgattgtgattttgataat----ttg 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||    
T  9798241 tcaaagcaaatctactaacatatcattgttaacttagctacattcttggagaaagacttaatttttctcacaattgattgtgattttgataatttgattg 9798340  T
Q  197 taactataatgagaaaggcatgcatag 223  Q
    ||||| |||||||||||||||||||||    
T  9798341 taactgtaatgagaaaggcatgcatag 9798367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 45175662 - 45175559
Alignment:
Q  1 cctttagcaccaaatttccaaacccaactacccgcaagtaattatgcagcgatctattacacaaaaagcagcagccttaagttgttcttcaattacagga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45175662 cctttagcaccaaatttccaaacccaactacccgcaagtaattatgcagcgatctattacacaaaaagcagcagccttaagttgttcttcaattacagga 45175563  T
Q  101 tcaa 104  Q
    ||||    
T  45175562 tcaa 45175559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 173
Target Start/End: Original strand, 45094818 - 45094917
Alignment:
Q  78 taagttgttcttcaattacaggatcaaagcaaatctactaac----atatcattgttaacttagctacattcttggagaaagacttaatttttctcacaa 173  Q
    |||||||||||||| || |||||||||||||||||||||| |    || ||||| |||||||| |  |||| ||| |||| |||||||||||||| ||||    
T  45094818 taagttgttcttcagttgcaggatcaaagcaaatctactacctaccatctcattattaacttatccgcattgttgaagaaggacttaatttttctaacaa 45094917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 45569688 - 45569755
Alignment:
Q  10 ccaaatttccaaacccaactacccgcaagtaatt-atgcagcgatctattacacaaaaagcagcagcc 76  Q
    ||||||||||| | || |||||| |||||||||| ||||||||| |||||||| ||||||||| ||||    
T  45569688 ccaaatttccacatcctactaccagcaagtaatttatgcagcgaactattacataaaaagcagaagcc 45569755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 168
Target Start/End: Original strand, 44668015 - 44668109
Alignment:
Q  78 taagttgttcttcaattacaggatcaaagcaaatcta----ctaacatatcattgttaacttagctacattcttggagaaagacttaatttttct 168  Q
    |||||||||||||| || ||| |||||||||||||||    ||| ||| ||||| ||||||||||   ||| ||| ||||||||||| |||||||    
T  44668015 taagttgttcttcagttgcagaatcaaagcaaatctaccacctagcatctcattattaacttagccgtattgttgaagaaagacttagtttttct 44668109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 45088473 - 45088546
Alignment:
Q  151 gaaagacttaatttttctcacaa-ttgattgtgattttgataatttgtaactataatgagaaaggcatgcatag 223  Q
    |||||| ||||||||||| |||| |||| |||||| || ||| ||||||| | ||||||||||| |||||||||    
T  45088473 gaaagatttaatttttctgacaaattgactgtgatgttaatagtttgtaattgtaatgagaaagacatgcatag 45088546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 42415606 - 42415560
Alignment:
Q  177 attgtgattttgataatttgtaactataatgagaaaggcatgcatag 223  Q
    |||||||| |||||||||||||| | ||||||||||||||| |||||    
T  42415606 attgtgatgttgataatttgtaattgtaatgagaaaggcatacatag 42415560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University