View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10812_high_3 (Length: 206)

Name: NF10812_high_3
Description: NF10812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10812_high_3
NF10812_high_3
[»] chr4 (8 HSPs)
chr4 (108-206)||(45177293-45177391)
chr4 (43-99)||(45177424-45177480)
chr4 (112-202)||(35816804-35816894)
chr4 (6-51)||(45182280-45182325)
chr4 (112-202)||(45093459-45093549)
chr4 (142-202)||(45568169-45568229)
chr4 (1-46)||(45093346-45093391)
chr4 (1-41)||(35817000-35817040)
[»] chr7 (1 HSPs)
chr7 (43-95)||(9797217-9797269)


Alignment Details
Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 108 - 206
Target Start/End: Complemental strand, 45177391 - 45177293
Alignment:
Q  108 tattttaccctaaaaatatacaaaagactgaagcaaactaattaaaagtaaattaagggcatctaacaatcctctgccttcatgcccttcaagataata 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45177391 tattttaccctaaaaatatacaaaagactgaagcaaactaattaaaagtaaattaagggcatctaacaatcctctgccttcatgcccttcaagataata 45177293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 45177480 - 45177424
Alignment:
Q  43 attaaagttaaaagtgtttgaaatccctttttagatagagatgaggtaaagtaataa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45177480 attaaagttaaaagtgtttgaaatccctttttagatagagatgaggtaaagtaataa 45177424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 112 - 202
Target Start/End: Complemental strand, 35816894 - 35816804
Alignment:
Q  112 ttaccctaaaaatatacaaaagactgaagcaaactaattaaaagtaaattaagggcatctaacaatcctctgccttcatgcccttcaagat 202  Q
    |||| ||| |||| ||||||| ||| ||| ||||||||||||| ||||||||||| ||||||||||||||||| |||||| ||||||||||    
T  35816894 ttactctataaatgtacaaaaaactaaagtaaactaattaaaactaaattaagggtatctaacaatcctctgctttcatgtccttcaagat 35816804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 45182325 - 45182280
Alignment:
Q  6 agagttgattaacaaagtgtaaaacttctcacttttcattaaagtt 51  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  45182325 agagttgattaacaaagtgtaaaacttctcacttttcattaaagtt 45182280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 202
Target Start/End: Original strand, 45093459 - 45093549
Alignment:
Q  112 ttaccctaaaaatatacaaaagactgaagcaaactaattaaaagtaaattaagggcatctaacaatcctctgccttcatgcccttcaagat 202  Q
    |||| ||| |||| ||||||| ||| ||| ||||||||||||| ||||| ||||| ||||||||||||| ||||||| || ||||||||||    
T  45093459 ttactctataaatgtacaaaaaactaaagtaaactaattaaaactaaatgaagggtatctaacaatcctttgccttcgtgtccttcaagat 45093549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 45568169 - 45568229
Alignment:
Q  142 aaactaattaaaagtaaattaagggcatctaacaatcctctgccttcatgcccttcaagat 202  Q
    ||||||||||||| ||||||||||| |||||||||||||||| ||||||| ||||| ||||    
T  45568169 aaactaattaaaactaaattaagggtatctaacaatcctctgtcttcatgtccttctagat 45568229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 45093346 - 45093391
Alignment:
Q  1 atgaaagagttgattaacaaagtgtaaaacttctcacttttcatta 46  Q
    |||||||||||||| |||||||| |||||||| |||||||||||||    
T  45093346 atgaaagagttgatgaacaaagtataaaacttatcacttttcatta 45093391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 35817040 - 35817000
Alignment:
Q  1 atgaaagagttgattaacaaagtgtaaaacttctcactttt 41  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  35817040 atgaaagagttgattaacaaagtataaaacttaccactttt 35817000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 9797217 - 9797269
Alignment:
Q  43 attaaagttaaaagtgtttgaaatccctttttagatagagatgaggtaaagta 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9797217 attaaagttaaaagtgtttgaaatccctttttagatagagatgaggtaaagta 9797269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University