View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10812_low_1 (Length: 402)
Name: NF10812_low_1
Description: NF10812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10812_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 34435487 - 34435104
Alignment:
| Q |
1 |
ataattccagccctatcatgatgagtgctggagagctagaaagtggaaatgcgggagaaccagcaaaactaattcgacaaagatacagagaagcatcaga |
100 |
Q |
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| T |
34435487 |
ataattccagccctatcatgatgagtgctggagagctagaaagtggaaatgcgggagaaccagcaaaactaattcgacaaagatacagagaagcatcaga |
34435388 |
T |
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| Q |
101 |
cataataagaaaagggaaaatgtgttgtctcttcataaacgatcttgatgcaggagccggtcgtatgggtggaacaacacagtacacagtgaacaatcaa |
200 |
Q |
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| T |
34435387 |
cataataagaaaagggaaaatgtgttgtctcttcataaacgatcttgatgcaggagccggtcgtatgggtggaacaacacagtacacagtgaacaatcaa |
34435288 |
T |
|
| Q |
201 |
atggtaaatgcaacacttatgaacattgctgataacccaacaaatgttcaacttcctggtatgtataacaaagaagagaatgcgcgtgtgcctatcattg |
300 |
Q |
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| T |
34435287 |
atggtaaatgcaacacttatgaacattgctgataacccaacaaatgttcaacttcctggtatgtataacaaagaagagaatgcacgtgtgcctatcattg |
34435188 |
T |
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| Q |
301 |
ttactggtaatgatttttcaacattgtatgctcctcttattcgtgacggtcgtatggagaaattctattgggcacctacaagag |
384 |
Q |
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| T |
34435187 |
ttactggtaatgatttttcaacattgtatgctcctcttattcgtgacggtcgtatggagaaattctattgggcacctacaagag |
34435104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 8 - 384
Target Start/End: Complemental strand, 30666118 - 30665742
Alignment:
| Q |
8 |
cagccctatcatgatgagtgctggagagctagaaagtggaaatgcgggagaaccagcaaaactaattcgacaaagatacagagaagcatcagacataata |
107 |
Q |
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| T |
30666118 |
cagccccatcatgatgagtgctggagagcttgaaagtggaaatgcaggagagccagcaaaactgatcagacagagataccgtgaagccgctgacattatc |
30666019 |
T |
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| Q |
108 |
agaaaagggaaaatgtgttgtctcttcataaacgatcttgatgcaggagccggtcgtatgggtggaacaacacagtacacagtgaacaatcaaatggtaa |
207 |
Q |
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|| || || || ||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||| ||||| ||||| || ||||| || ||||| | |
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| T |
30666018 |
aggaagggaaagatgtgttgtctgttcatcaacgatctcgatgcaggagcaggtcgtatgggtggaaccacacaatacactgtcaacaaccagatggtga |
30665919 |
T |
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| Q |
208 |
atgcaacacttatgaacattgctgataacccaacaaatgttcaacttcctggtatgtataacaaagaagagaatgcgcgtgtgcctatcattgttactgg |
307 |
Q |
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| T |
30665918 |
atgccacactcatgaacattgctgataaccccaccaatgtccaactccctggtatgtacaacaaggaagataacgctcgtgtgcccatcattgtcaccgg |
30665819 |
T |
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| Q |
308 |
taatgatttttcaacattgtatgctcctcttattcgtgacggtcgtatggagaaattctattgggcacctacaagag |
384 |
Q |
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| T |
30665818 |
taacgatttctcaacactttatgctcctctcatccgtgatggtcgtatggagaaattctactgggctcctacaagag |
30665742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 9 - 379
Target Start/End: Complemental strand, 6853850 - 6853480
Alignment:
| Q |
9 |
agccctatcatgatgagtgctggagagctagaaagtggaaatgcgggagaaccagcaaaactaattcgacaaagatacagagaagcatcagacataataa |
108 |
Q |
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|||||||| ||||||||||| ||||| | |||||||||||||| ||||| || ||||| | ||| | ||||| ||| | || || || ||||| || | |
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| T |
6853850 |
agccctataatgatgagtgccggagaattggaaagtggaaatgcaggagagcctgcaaagttgattaggcaaaggtaccgtgaggcgtccgacattatca |
6853751 |
T |
|
| Q |
109 |
gaaaagggaaaatgtgttgtctcttcataaacgatcttgatgcaggagccggtcgtatgggtggaacaacacagtacacagtgaacaatcaaatggtaaa |
208 |
Q |
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| T |
6853750 |
gaaaaggaaagatgtgctgtctcttcatcaatgatcttgatgcaggagctggtagaatgggtggcactactcaatacacagtcaacaaccagatggtaaa |
6853651 |
T |
|
| Q |
209 |
tgcaacacttatgaacattgctgataacccaacaaatgttcaacttcctggtatgtataacaaagaagagaatgcgcgtgtgcctatcattgttactggt |
308 |
Q |
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|||||| || |||||||||||||| ||||| || |||||||||||||| |||||||| ||||||||||||||||| || || |||||||| || ||||| |
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| T |
6853650 |
tgcaaccctcatgaacattgctgacaaccctaccaatgttcaacttcccggtatgtacaacaaagaagagaatgcccgcgtccctatcatcgtcactggc |
6853551 |
T |
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| Q |
309 |
aatgatttttcaacattgtatgctcctcttattcgtgacggtcgtatggagaaattctattgggcacctac |
379 |
Q |
| |
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||||| || || || |||||||||||| | |||||||| || |||||||| |||||||| ||||||||||| |
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| T |
6853550 |
aatgacttctctacgttgtatgctcctttaattcgtgatggacgtatggaaaaattctactgggcacctac |
6853480 |
T |
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