View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10812_low_2 (Length: 382)
Name: NF10812_low_2
Description: NF10812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10812_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 43768031 - 43768390
Alignment:
| Q |
1 |
aattctaagatgtggacatattgcacagttttcgaa-tgataaatactgtggaggcacagagcatatactacttaacttggacatgaaatcaatcataaa |
99 |
Q |
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| T |
43768031 |
aattctaagatgtggacatattgcacagttttccaaatgataaatactgtggaggcacagagcatatactacttaacttggacatgaaatcaatcataaa |
43768130 |
T |
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| Q |
100 |
actctaaccttaattttgcatttggcacgtacagatgtttgctgagttgcaaatgttaacaccaatggttccaactagagaagtgtattttgtcagatac |
199 |
Q |
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| T |
43768131 |
actctaaccttaattttgcatttggtacgtacagatgtttgctgagttgcaaatgttaacaccaatggttccaactagagaagtgtattttgtcagatac |
43768230 |
T |
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| Q |
200 |
tgcaaacggttgagtggtgaaaaatgggctattgttgatgtgtccatagacaaagtagaagacaacattgacaagtccttagtgaaatgcagaaaacgcc |
299 |
Q |
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| T |
43768231 |
tgcaaacggttgagtggtgaaaaatgggctattgttgatgtgtccatagacaaagtagaagacaacattgacaagtccttagtgaaatgcagaaaacgcc |
43768330 |
T |
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| Q |
300 |
catctggttgcattattgaggataagtcaaatggacattgcaaagtatgtaatagcagca |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43768331 |
catctggttgcattattgaggataagtcaaatggacattgcaaagtatgtaatagcagca |
43768390 |
T |
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