View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10812_low_5 (Length: 249)

Name: NF10812_low_5
Description: NF10812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10812_low_5
NF10812_low_5
[»] chr1 (3 HSPs)
chr1 (19-242)||(7622778-7623001)
chr1 (19-242)||(7627329-7627552)
chr1 (19-242)||(7634465-7634688)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 7622778 - 7623001
Alignment:
Q  19 ctattgtttctcttggtaatagtaatggtgatggagggaataatcttaatgtctctttcactactgatttaagataaggaagcttttcaatatcatcttc 118  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7622778 ctattgtttctcttggcaatagtaatggtgatggagggaataatcttaatgtctctttcactactgatttaagataaggaagcttttcaatatcatcttc 7622877  T
Q  119 atttataaaatctttgtcttcatataagtttctgatttccatttgaaccttgttcatcactcttggattgttcatcaatgctgtcatagcccaaaccact 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7622878 atttataaaatctttgtcttcatataagtttctgatttccatttgaaccttgttcatcactcttggattgttcatcaatgctgtcatagcccaaaccact 7622977  T
Q  219 actgctgaacttgtctctgctcct 242  Q
    |||||||||||||| |||| ||||    
T  7622978 actgctgaacttgtgtctgttcct 7623001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 7627329 - 7627552
Alignment:
Q  19 ctattgtttctcttggtaatagtaatggtgatggagggaataatcttaatgtctctttcactactgatttaagataaggaagcttttcaatatcatcttc 118  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7627329 ctattgtttctcttggcaatagtaatggtgatggagggaataatcttaatgtctctttcactactgatttaagataaggaagcttttcaatatcatcttc 7627428  T
Q  119 atttataaaatctttgtcttcatataagtttctgatttccatttgaaccttgttcatcactcttggattgttcatcaatgctgtcatagcccaaaccact 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7627429 atttataaaatctttgtcttcatataagtttctgatttccatttgaaccttgttcatcactcttggattgttcatcaatgctgtcatagcccaaaccact 7627528  T
Q  219 actgctgaacttgtctctgctcct 242  Q
     ||||||||||||| |||| ||||    
T  7627529 gctgctgaacttgtgtctgttcct 7627552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 7634465 - 7634688
Alignment:
Q  19 ctattgtttctcttggtaatagtaatggtgatggagggaataatcttaatgtctctttcactactgatttaagataaggaagcttttcaatatcatcttc 118  Q
    |||||||||||||||||| ||||||||||||||| || |||||||| | |||||||||||| |||| |||||||||||| ||||||||||||||||||||    
T  7634465 ctattgtttctcttggtactagtaatggtgatggtggaaataatctcattgtctctttcaccactgctttaagataaggtagcttttcaatatcatcttc 7634564  T
Q  119 atttataaaatctttgtcttcatataagtttctgatttccatttgaaccttgttcatcactcttggattgttcatcaatgctgtcatagcccaaaccact 218  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  7634565 atttataaaatatttgtcttcatataagtttctgatttccatttgaaccttgttcatcactctaggattgttcatcaatgttgtcatagcccaaaccact 7634664  T
Q  219 actgctgaacttgtctctgctcct 242  Q
    | |||||||||||| |||| ||||    
T  7634665 attgctgaacttgtgtctgttcct 7634688  T

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