View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10812_low_9 (Length: 229)

Name: NF10812_low_9

Description: NF10812

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF10812_low_9

[»] chr1 (1 HSPs)

[»] chr7 (1 HSPs)

Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 175; E-Value: 2e-94

Query Start/End: Original strand, 15 - 208

Target Start/End: Complemental strand, 21183400 - 21183209

Alignment:

Q	15	cataggccttgaacttgaaggtggaggagaggctaaggcttcatgcaacaatgtgaaattgtcatacagaggaaatgttagtccaagctgcaattacata	114	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	21183400	cataggccttgaacttgaaggtggaggagaggctaaggcttcatgcaacaatgtgaaattgtcatacagaggaaatgttagtccaagctgcaattacatc	21183301	T

Q	115	gaggaaatgcatgaacttggtggctttggaaagactcatagtatgaattaataggatatatatataagacatggttatttgctttgtatatgtt	208	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	21183300	gaggaaatgcatgaacttggtggctttggaaagactcatagtatgaattaataggatata--tataagacatgtttatttgctttgtatatgtt	21183209	T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 30; E-Value: 0.00000008

Query Start/End: Original strand, 46 - 107

Target Start/End: Complemental strand, 36354031 - 36353970

Alignment:

Q	46	gctaaggcttcatgcaacaatgtgaaattgtcatacagaggaaatgttagtccaagctgcaa	107	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|
T	36354031	gctaaggctttatgcaacaatgttcaattgtcttacataggaaatgttaacccacgctgcaa	36353970	T

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