View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10813_low_1 (Length: 459)
Name: NF10813_low_1
Description: NF10813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10813_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 451
Target Start/End: Complemental strand, 32197314 - 32196881
Alignment:
| Q |
18 |
agtattttctgaagggctgtaaatgtgaagttgttctatgctttctgttctgctgctgttttctattggctgcaagtcagagaactgaccctactgaagg |
117 |
Q |
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| T |
32197314 |
agtattttctgaagggctgtaaatgtgaacttgttctatgctttctgttctgctgctgttttctattgtctgcaagtcagagaactgaccctactgaagg |
32197215 |
T |
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| Q |
118 |
taacttttttcttcctcttttgtatcatatattctattgtttgttcgacggaatgtactctattgttcgcatgatcatttcattttcactaacttgcagt |
217 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||| ||||||||||||||||||| |
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| T |
32197214 |
tagcttttttcttcctcttttgtatcatatattctattgtttgttcgacggaatgtattctattgtttatatgatgattttattttcactaacttgcagt |
32197115 |
T |
|
| Q |
218 |
tgacgcattgagaaccatatgggacaatttgattgatattaatggaaatttaagcagctggagtcacggagacccatgtagatccaagtggacgggagtt |
317 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
32197114 |
tgacacattgagaaccataagggacaatttgattgatattaatggaaatttgagcagctggagtcgcggagacccatgtaattccaagtggacgggagtt |
32197015 |
T |
|
| Q |
318 |
ctgtgctcgaatacaacattagaagatggctttctacatgttcaacgattgtaagatacgcttcttttttccattgaaatagtcctgattgcctaagtag |
417 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32197014 |
ctgtgcttgaatacaacattagaagatggctttctacatgttcaacgattgtaagatacgcttcttttttccattgaaatagtcctgattgcctaagtag |
32196915 |
T |
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| Q |
418 |
tttggaatgtatttctcagcttttcgttcatctc |
451 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
32196914 |
tttggaatgtatttctcagcttttcgttcgtctc |
32196881 |
T |
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