View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10813_low_8 (Length: 242)
Name: NF10813_low_8
Description: NF10813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10813_low_8 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 47072583 - 47072359
Alignment:
| Q |
17 |
agtagagatatcaaaccacttgtttcccagttctctcatccatccactattctatagatattacaattagagacagccaacctttcttctctgtatagat |
116 |
Q |
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| T |
47072583 |
agtagagatatcaaaccacttgtttcccagttccctcatccatccactattctatagatattacaattagagacagccaaccgttcttctctgtatagat |
47072484 |
T |
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| Q |
117 |
acttgatccacaatccttagatattaagtggtacattttatttgtgttggatgcggacgaaattttaggtcgcaaatgcannnnnnncattcaaatgaac |
216 |
Q |
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| T |
47072483 |
acttgatcaacaatccttagatattaagtggtacattttatttgtgttggatgcggacgaaattttaggtcgcaaatgc-gttttttcattcaaatgaac |
47072385 |
T |
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| Q |
217 |
tgtaaattgaagcatgaatctctgcc |
242 |
Q |
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| T |
47072384 |
tgtaaattgaagcatgaatctctgcc |
47072359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 75 - 242
Target Start/End: Complemental strand, 33598601 - 33598436
Alignment:
| Q |
75 |
tattacaattagagacagccaacctttcttctctgtatagatacttgatccacaatccttagatattaagtggtacattttatttgtgttggatgcggac |
174 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33598601 |
tattacaattagagacagccaacctttcttctctgtatagatacttgatccacaatccttagatattaagtggtacattttatttgtgttggatgcggac |
33598502 |
T |
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| Q |
175 |
gaaattttaggtcgcaaatgcannnnnnncattcaaatgaactgtaaattgaagcatgaatctctgcc |
242 |
Q |
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| T |
33598501 |
gaaattttaggtctcaaat--acgtttttcattcaaatgaactgtagattgaagcatgaatctctgcc |
33598436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 18232585 - 18232721
Alignment:
| Q |
17 |
agtagagatatcaaaccacttgtttcccagttctctcatccatccactattctatagatattacaattagagacagccaacctttcttctctgtatagat |
116 |
Q |
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|||||||||||||||||||| ||||| || ||| ||||| || | |||||| |||||| ||||||||||| | | |||||||| |||||| ||||||| |
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| T |
18232585 |
agtagagatatcaaaccactcgtttcgcatttccctcatgcacgctctattcaatagattttacaattagata--gtcaaccttttttctctctatagat |
18232682 |
T |
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| Q |
117 |
acttgatccacaatccttagatattaagtggtacatttt |
155 |
Q |
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| T |
18232683 |
agttgatccacaatccttagattttaagtggtacatttt |
18232721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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