View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10814_5 (Length: 314)

Name: NF10814_5
Description: NF10814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10814_5
NF10814_5
[»] chr6 (18 HSPs)
chr6 (1-138)||(4811201-4811338)
chr6 (187-272)||(4811068-4811153)
chr6 (187-272)||(25068203-25068289)
chr6 (187-272)||(9828934-9829019)
chr6 (187-272)||(17201612-17201697)
chr6 (187-272)||(17202865-17202950)
chr6 (195-272)||(17906806-17906883)
chr6 (187-272)||(25067977-25068062)
chr6 (221-272)||(17202680-17202731)
chr6 (192-272)||(27579618-27579698)
chr6 (227-272)||(27315341-27315386)
chr6 (220-272)||(32208413-32208466)
chr6 (220-272)||(23610481-23610532)
chr6 (227-266)||(23622273-23622312)
chr6 (227-272)||(808885-808930)
chr6 (227-272)||(4100320-4100365)
chr6 (227-272)||(26832522-26832567)
chr6 (187-268)||(15130914-15130995)
[»] chr7 (45 HSPs)
chr7 (187-272)||(4680901-4680986)
chr7 (187-272)||(11650013-11650098)
chr7 (187-272)||(12140866-12140951)
chr7 (187-272)||(16671620-16671705)
chr7 (187-272)||(17645988-17646073)
chr7 (192-301)||(48640777-48640886)
chr7 (187-270)||(11646404-11646487)
chr7 (193-272)||(23591419-23591498)
chr7 (220-272)||(4681150-4681202)
chr7 (187-272)||(9141966-9142051)
chr7 (195-272)||(18486657-18486734)
chr7 (197-272)||(27716536-27716611)
chr7 (227-272)||(23591636-23591681)
chr7 (227-272)||(27716314-27716359)
chr7 (220-272)||(18487199-18487251)
chr7 (220-272)||(30991508-30991560)
chr7 (220-272)||(45419847-45419899)
chr7 (187-255)||(32278158-32278226)
chr7 (221-272)||(43059240-43059291)
chr7 (187-266)||(11645942-11646021)
chr7 (187-250)||(11646642-11646705)
chr7 (222-272)||(45419641-45419691)
chr7 (227-272)||(1566513-1566558)
chr7 (187-301)||(2354641-2354755)
chr7 (187-260)||(2526970-2527044)
chr7 (227-272)||(19222161-19222206)
chr7 (227-272)||(34837243-34837288)
chr7 (227-268)||(35124780-35124821)
chr7 (227-272)||(40686897-40686942)
chr7 (227-272)||(46264288-46264333)
chr7 (187-268)||(11646218-11646299)
chr7 (220-272)||(16492550-16492602)
chr7 (220-272)||(16671294-16671346)
chr7 (220-272)||(17645662-17645714)
chr7 (187-260)||(21224153-21224226)
chr7 (220-272)||(48641021-48641073)
chr7 (187-266)||(40450112-40450191)
chr7 (222-272)||(48641447-48641497)
chr7 (227-272)||(2853222-2853267)
chr7 (227-272)||(4681603-4681648)
chr7 (220-260)||(9142150-9142190)
chr7 (187-272)||(22324299-22324384)
chr7 (220-272)||(34837489-34837541)
chr7 (187-272)||(22773916-22774000)
chr7 (187-268)||(21128055-21128136)
[»] scaffold0018 (1 HSPs)
scaffold0018 (187-272)||(163808-163893)
[»] chr8 (28 HSPs)
chr8 (187-272)||(23828133-23828218)
chr8 (187-272)||(37198119-37198205)
chr8 (187-272)||(23085875-23085960)
chr8 (187-272)||(39922094-39922179)
chr8 (187-272)||(1197893-1197978)
chr8 (187-272)||(3459141-3459226)
chr8 (187-272)||(27853676-27853761)
chr8 (187-272)||(23960806-23960890)
chr8 (188-272)||(37410078-37410162)
chr8 (194-272)||(32062839-32062917)
chr8 (220-272)||(23830951-23831003)
chr8 (187-272)||(37198304-37198389)
chr8 (220-272)||(38111392-38111444)
chr8 (187-272)||(23838348-23838434)
chr8 (227-272)||(30439048-30439093)
chr8 (187-272)||(35617696-35617782)
chr8 (198-272)||(40399500-40399574)
chr8 (220-272)||(34947524-34947576)
chr8 (232-272)||(37197912-37197952)
chr8 (227-266)||(1276535-1276574)
chr8 (222-267)||(13797492-13797537)
chr8 (236-272)||(3990209-3990245)
chr8 (228-272)||(23960588-23960632)
chr8 (187-260)||(29580056-29580129)
chr8 (187-272)||(33198848-33198933)
chr8 (227-265)||(18308258-18308296)
chr8 (222-272)||(37426166-37426216)
chr8 (227-272)||(44429105-44429150)
[»] chr4 (43 HSPs)
chr4 (187-272)||(48076205-48076290)
chr4 (187-272)||(48076383-48076468)
chr4 (187-270)||(23952512-23952595)
chr4 (187-272)||(23952786-23952871)
chr4 (187-272)||(44500687-44500772)
chr4 (187-272)||(47768967-47769052)
chr4 (192-267)||(22292918-22292993)
chr4 (187-272)||(36639187-36639272)
chr4 (187-272)||(43161746-43161831)
chr4 (187-272)||(48076560-48076645)
chr4 (187-272)||(54653655-54653740)
chr4 (193-272)||(53144851-53144930)
chr4 (220-272)||(4941726-4941778)
chr4 (187-272)||(8118612-8118697)
chr4 (187-272)||(8397748-8397833)
chr4 (220-272)||(22292739-22292791)
chr4 (187-260)||(28379779-28379852)
chr4 (220-272)||(28389777-28389829)
chr4 (221-272)||(8118430-8118481)
chr4 (221-272)||(21581282-21581333)
chr4 (187-266)||(7796800-7796879)
chr4 (231-272)||(8079354-8079395)
chr4 (198-272)||(12796126-12796200)
chr4 (221-270)||(43161933-43161982)
chr4 (222-267)||(47631588-47631633)
chr4 (220-272)||(2177312-2177364)
chr4 (195-272)||(7821326-7821403)
chr4 (187-272)||(21585562-21585647)
chr4 (220-260)||(24049613-24049653)
chr4 (220-272)||(52689624-52689676)
chr4 (222-269)||(28379981-28380028)
chr4 (187-272)||(2481657-2481739)
chr4 (222-272)||(7809398-7809448)
chr4 (227-272)||(24049338-24049383)
chr4 (227-272)||(47631415-47631460)
chr4 (187-272)||(7821534-7821619)
chr4 (220-272)||(28813272-28813324)
chr4 (220-272)||(29967227-29967279)
chr4 (195-272)||(36639368-36639445)
chr4 (222-272)||(7809582-7809632)
chr4 (187-272)||(32010688-32010774)
chr4 (235-272)||(41852151-41852188)
chr4 (220-272)||(8479149-8479200)
[»] chr3 (28 HSPs)
chr3 (187-272)||(11454578-11454663)
chr3 (187-272)||(36643133-36643218)
chr3 (187-272)||(43017286-43017371)
chr3 (187-272)||(46451485-46451570)
chr3 (187-272)||(47503059-47503144)
chr3 (192-272)||(837209-837289)
chr3 (187-271)||(37760512-37760596)
chr3 (187-266)||(38887377-38887456)
chr3 (187-272)||(18094971-18095056)
chr3 (193-267)||(40050871-40050945)
chr3 (220-268)||(38887588-38887636)
chr3 (220-272)||(47503232-47503284)
chr3 (187-270)||(18094756-18094839)
chr3 (192-267)||(38887806-38887881)
chr3 (187-266)||(53047599-53047678)
chr3 (227-272)||(11453993-11454038)
chr3 (220-301)||(46451331-46451412)
chr3 (227-271)||(35560157-35560201)
chr3 (187-272)||(45514425-45514509)
chr3 (227-260)||(54274787-54274820)
chr3 (187-272)||(11454220-11454305)
chr3 (187-301)||(11454399-11454512)
chr3 (220-272)||(16015256-16015308)
chr3 (220-260)||(24365782-24365822)
chr3 (195-260)||(47519872-47519937)
chr3 (220-260)||(47519974-47520014)
chr3 (220-266)||(51654092-51654138)
chr3 (187-272)||(20877222-20877307)
[»] chr1 (38 HSPs)
chr1 (187-272)||(318570-318655)
chr1 (187-272)||(1156071-1156156)
chr1 (187-272)||(27296177-27296262)
chr1 (187-272)||(51114105-51114190)
chr1 (187-301)||(42492142-42492256)
chr1 (187-272)||(5428543-5428628)
chr1 (187-272)||(44263104-44263189)
chr1 (187-272)||(51113921-51114006)
chr1 (192-272)||(42497297-42497377)
chr1 (187-301)||(51113738-51113852)
chr1 (222-271)||(51272499-51272548)
chr1 (195-272)||(38684038-38684115)
chr1 (187-272)||(42496939-42497024)
chr1 (187-272)||(44262679-44262764)
chr1 (221-272)||(3227229-3227280)
chr1 (187-263)||(28950274-28950350)
chr1 (221-272)||(44099676-44099727)
chr1 (187-301)||(16165663-16165777)
chr1 (228-272)||(5429108-5429152)
chr1 (220-272)||(6537661-6537713)
chr1 (220-272)||(21617804-21617856)
chr1 (187-272)||(27296352-27296437)
chr1 (193-272)||(5428954-5429033)
chr1 (227-272)||(42497117-42497162)
chr1 (187-272)||(1647558-1647643)
chr1 (187-260)||(33375645-33375718)
chr1 (222-265)||(24595278-24595321)
chr1 (227-266)||(45417612-45417651)
chr1 (221-271)||(44263359-44263409)
chr1 (198-301)||(52740726-52740829)
chr1 (227-272)||(12115360-12115405)
chr1 (187-249)||(28950016-28950078)
chr1 (227-272)||(30084034-30084079)
chr1 (187-272)||(4100798-4100883)
chr1 (227-266)||(28949904-28949943)
chr1 (187-272)||(18912342-18912428)
chr1 (227-272)||(28950176-28950221)
chr1 (227-272)||(52584989-52585034)
[»] chr5 (31 HSPs)
chr5 (187-272)||(11313994-11314080)
chr5 (187-272)||(11313817-11313902)
chr5 (187-272)||(12442158-12442243)
chr5 (220-272)||(16305394-16305446)
chr5 (187-272)||(16528615-16528700)
chr5 (187-272)||(16528796-16528881)
chr5 (187-272)||(16529150-16529235)
chr5 (187-272)||(43394959-43395044)
chr5 (187-270)||(16526213-16526296)
chr5 (187-266)||(35159719-35159797)
chr5 (187-272)||(7127574-7127659)
chr5 (187-272)||(26523165-26523250)
chr5 (188-272)||(11313656-11313740)
chr5 (192-272)||(24351477-24351557)
chr5 (220-267)||(41092901-41092948)
chr5 (187-272)||(7673224-7673310)
chr5 (187-266)||(16528974-16529051)
chr5 (227-272)||(35159472-35159517)
chr5 (187-272)||(9488075-9488160)
chr5 (220-272)||(24350924-24350976)
chr5 (227-267)||(41093080-41093120)
chr5 (227-270)||(14166190-14166233)
chr5 (192-256)||(24326545-24326609)
chr5 (192-256)||(24350732-24350796)
chr5 (192-256)||(24351286-24351350)
chr5 (220-266)||(43395142-43395188)
chr5 (227-272)||(19121962-19122007)
chr5 (227-272)||(19122298-19122343)
chr5 (187-265)||(26523268-26523346)
chr5 (220-272)||(23138079-23138131)
chr5 (187-272)||(31487089-31487174)
[»] chr2 (29 HSPs)
chr2 (187-272)||(10129503-10129588)
chr2 (187-272)||(28611814-28611899)
chr2 (220-272)||(28612239-28612291)
chr2 (227-272)||(41995759-41995804)
chr2 (220-272)||(5001705-5001757)
chr2 (220-272)||(29549839-29549891)
chr2 (187-272)||(44256488-44256573)
chr2 (187-272)||(44543721-44543806)
chr2 (221-272)||(5001380-5001431)
chr2 (221-272)||(5013050-5013101)
chr2 (187-255)||(5013219-5013287)
chr2 (220-270)||(12896434-12896484)
chr2 (195-272)||(11735932-11736009)
chr2 (232-272)||(19640367-19640407)
chr2 (232-272)||(19838960-19839000)
chr2 (228-272)||(28612663-28612707)
chr2 (196-272)||(11736325-11736401)
chr2 (193-272)||(12898044-12898123)
chr2 (220-265)||(41326417-41326462)
chr2 (227-272)||(44543932-44543977)
chr2 (187-260)||(627552-627625)
chr2 (187-272)||(6348087-6348172)
chr2 (187-260)||(28612039-28612112)
chr2 (192-272)||(29550153-29550237)
chr2 (193-272)||(37131494-37131572)
chr2 (231-272)||(627635-627676)
chr2 (220-272)||(6347941-6347992)
chr2 (222-266)||(28612458-28612502)
chr2 (227-267)||(29550013-29550053)
[»] scaffold0504 (1 HSPs)
scaffold0504 (227-272)||(1539-1584)
[»] scaffold0013 (1 HSPs)
scaffold0013 (220-272)||(102751-102803)
[»] scaffold0240 (2 HSPs)
scaffold0240 (192-272)||(13112-13192)
scaffold0240 (227-272)||(13306-13351)
[»] scaffold0294 (1 HSPs)
scaffold0294 (195-260)||(12403-12468)
[»] scaffold0320 (1 HSPs)
scaffold0320 (221-272)||(14586-14637)


Alignment Details
Target: chr6 (Bit Score: 134; Significance: 9e-70; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 4811338 - 4811201
Alignment:
Q  1 aatggtgcatgaacaaacaatctagagcttcaaattttaatccctaattgggtaaatgcatatcttaatccctaattgcatatatggtgcatgaaacaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4811338 aatggtgcatgaacaaacaatctagagcttcaaattttaatccctaattgggtaaatgcatatcttaatccctaattgtatatatggtgcatgaaacaat 4811239  T
Q  101 caatctcgaccttaaatttagattttgaagtcgtaaac 138  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4811238 caatctcgaccttaaatttagattttgaagtcgtaaac 4811201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 4811153 - 4811068
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  4811153 gttacgtctgcagcaatttaacctaattttttcccgctcgtttgctttattaggtttgcaattatttaacctaactaattccatct 4811068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 25068203 - 25068289
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaa-taaattccatct 272  Q
    ||||||||||||||||||||||||||       |||||| ||||||||||||||||||||||||||||||||||  |||||||||||    
T  25068203 gttacgtctgcagcaatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaaattccatct 25068289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 9828934 - 9829019
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||| |||||||||||||||| |||       |||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  9828934 gttacctctgcagcaatttaacttaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 9829019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 17201612 - 17201697
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||| |||||||||||||       |||||| |||| ||||||||||||||||||||||||||||| ||||| |||||    
T  17201612 gttacgtctgcaacaatttaacctaacttttttccgctcatttgttttattaggtttgcaattatttaacctaacaaatttcatct 17201697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 17202865 - 17202950
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| |||||||||||||||||||||       |||| | ||||||||||||| |||||||||||||||||||| |||||||||||    
T  17202865 gttaggtctgcagcaatttaacctaattttttcccgcccatttgctttattagatttgcaattatttaacctaacaaattccatct 17202950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 272
Target Start/End: Complemental strand, 17906883 - 17906806
Alignment:
Q  195 tgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||       | |||| |||||||||||||||||| ||||||||||||||| |||||||||||    
T  17906883 tgcagcaatttaacctaattttttccagctcatttgctttattaggtttgtaattatttaacctaacaaattccatct 17906806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 25067977 - 25068062
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||| ||||||||||||||||||||       |||||| |||||||||| ||||||||||||||||||| ||| ||||| |||||    
T  25067977 gttacatctgcagcaatttaacctaatttttttccgctcatttgctttataaggtttgcaattatttaacataacaaattacatct 25068062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 272
Target Start/End: Original strand, 17202680 - 17202731
Alignment:
Q  221 cgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||| ||||||||||||||||||||||||||||| |||| |||||||||||    
T  17202680 cgctcatttgctttattaggtttgcaattatttaatctaacaaattccatct 17202731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 27579618 - 27579698
Alignment:
Q  192 gtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||| |||||||||||||       || ||| |||||||||||||||||||||||||||||||||| |||||| ||||    
T  27579618 gtctgcaacaatttaacctaattttttcccactcatttgctttattaggtttgcaattatttaacctaacaaattcaatct 27579698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 27315341 - 27315386
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||    
T  27315341 tttgctttattaggtttgcaattatttaacctaacaaattcaatct 27315386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 32208466 - 32208413
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaatta-tttaacctaataaattccatct 272  Q
    |||||| |||||||||||||||||||||||| |||||||||| |||||||||||    
T  32208466 ccgctcatttgctttattaggtttgcaattattttaacctaacaaattccatct 32208413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 23610481 - 23610532
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| ||||||||||||||||| |||||||||||||||| |||||||||||    
T  23610481 ccgctcatttgctttattaggttt-caattatttaacctaacaaattccatct 23610532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 266
Target Start/End: Original strand, 23622273 - 23622312
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaatt 266  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  23622273 tttgctttattaggtttgcaattatttaacctaacaaatt 23622312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 808885 - 808930
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||||||||||||||| || ||||| |||||    
T  808885 tttgctttattaggtttgcaattatttaaccaaacaaatttcatct 808930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 4100365 - 4100320
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||| |||||||||||||||| |||| |||||||||||    
T  4100365 tttgctttattatgtttgcaattatttaagctaacaaattccatct 4100320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 26832567 - 26832522
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||||||||||||||||||||| ||| ||||| |||||    
T  26832567 tttgctttattaggtttgcaattatttaacttaacaaattacatct 26832522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 268
Target Start/End: Original strand, 15130914 - 15130995
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattcc 268  Q
    |||||||||||||||| ||||| |||       || ||| || |||||||||| |||||||||||||||||||| |||||||    
T  15130914 gttacgtctgcagcaacttaacgtaaatattttccactcattcgctttattagatttgcaattatttaacctaacaaattcc 15130995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 45)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 4680986 - 4680901
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||||||||||       |||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  4680986 gttacgtctgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 4680901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 11650098 - 11650013
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| ||||||| |||||||||||||       |||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  11650098 gttaggtctgcaacaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 11650013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 12140951 - 12140866
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||||||||||       |||||| ||||| |||||||||||||||||||||||||||| ||||| |||||    
T  12140951 gttacgtctgcagcaatttaacctaatttttttccgctcatttgcgttattaggtttgcaattatttaacctaacaaatttcatct 12140866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 16671620 - 16671705
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| |||||||||||| ||||||||       |||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  16671620 gttaggtctgcagcaatataacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 16671705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 17645988 - 17646073
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| |||||||||||| ||||||||       |||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  17645988 gttaggtctgcagcaatataacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 17646073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 192 - 301
Target Start/End: Complemental strand, 48640886 - 48640777
Alignment:
Q  192 gtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatctnnnnnnnntgcatcgcacc 291  Q
    |||||||||||||||||||||       |||||| |||||||||||||||||||||||||||||||||| ||||| |||||        |||||||||||    
T  48640886 gtctgcagcaatttaacctaatttcttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatctaaaaaaaatgcatcgcacc 48640787  T
Q  292 aattttattc 301  Q
    ||||| ||||    
T  48640786 aatttcattc 48640777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 11646487 - 11646404
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccat 270  Q
    |||||||||||||||| |||| ||||       |||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  11646487 gttacgtctgcagcaacttaatctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaattccat 11646404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 193 - 272
Target Start/End: Complemental strand, 23591498 - 23591419
Alignment:
Q  193 tctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| |||||||||||||       |||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  23591498 tctgcaacaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 23591419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 4681202 - 4681150
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  4681202 ccgctcatttgctttattatgtttgcaattatttaacctaataaattccatct 4681150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 9142051 - 9141966
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| |||||||||||||||||||||       | |||| |||||||||||||||||||||||||||||||||| ||||| |||||    
T  9142051 gttatgtctgcagcaatttaacctaattttttcctgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 9141966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 272
Target Start/End: Original strand, 18486657 - 18486734
Alignment:
Q  195 tgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||       |||||| |||||||||||||||||||||||||||||||||| ||||| |||||    
T  18486657 tgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 18486734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 272
Target Start/End: Complemental strand, 27716611 - 27716536
Alignment:
Q  197 cagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||       |||||| |||||||||||||||||||||||||||||||||| || ||||||||    
T  27716611 cagcaatttaacctaattttatcccgctcatttgctttattaggtttgcaattatttaacctaacaacttccatct 27716536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 23591681 - 23591636
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  23591681 tttgctttattaggtttgcaattatttaacctaacaaattccatct 23591636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 27716359 - 27716314
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  27716359 tttgctttattaggtttgcaattatttaacctaacaaattccatct 27716314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 18487199 - 18487251
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||| |||||    
T  18487199 ccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 18487251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 30991508 - 30991560
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| |||||||||||| ||||||||||||||||||||| |||||||||||    
T  30991508 ccgctcatttgctttattatgtttgcaattatttaacctaacaaattccatct 30991560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 45419899 - 45419847
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| |||||||||||||||||| ||||||||||||||| |||||||||||    
T  45419899 ccgctcatttgctttattaggtttgtaattatttaacctaacaaattccatct 45419847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 32278226 - 32278158
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaa 255  Q
    ||||||||||||||||||||||||||       |||||| ||| |||||||||||||||||||||||||    
T  32278226 gttacgtctgcagcaatttaacctaattttttcccgctcatttactttattaggtttgcaattatttaa 32278158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 272
Target Start/End: Original strand, 43059240 - 43059291
Alignment:
Q  221 cgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||| ||||||||||||||||||||||||||||| |||| |||||||||||    
T  43059240 cgctcatttgctttattaggtttgcaattatttaatctaacaaattccatct 43059291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 187 - 266
Target Start/End: Complemental strand, 11646021 - 11645942
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaatt 266  Q
    |||||||||||| ||| |||||||||       |||||| |||||||||||||||||| ||||||||||||||| |||||    
T  11646021 gttacgtctgcaacaacttaacctaattttttcccgctcatttgctttattaggtttgtaattatttaacctaacaaatt 11645942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 11646642 - 11646705
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaatta 250  Q
    ||||||||||||||||||||||||||       |||||| ||||||||||||||||||||||||    
T  11646642 gttacgtctgcagcaatttaacctaatttttttccgctcatttgctttattaggtttgcaatta 11646705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 45419691 - 45419641
Alignment:
Q  222 gctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| |||||||||||||||||||||||||||||||||| ||||| |||||    
T  45419691 gctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 45419641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 1566558 - 1566513
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||    
T  1566558 tttgctttattaggtttgcaattatttaacctaacaaatttcatct 1566513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 301
Target Start/End: Complemental strand, 2354755 - 2354641
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatctnnnnnnnntgcatc 286  Q
    |||| ||||||||||||||||| |||       | |||| |||||||||||||||||||||||||||||  ||| |||||||||||        |||||     
T  2354755 gttaggtctgcagcaatttaacgtaatgttttccagctcatttgctttattaggtttgcaattatttaatataacaaattccatctaaaaaaaatgcatt 2354656  T
Q  287 gcaccaattttattc 301  Q
    |||||||||||||||    
T  2354655 gcaccaattttattc 2354641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 2527044 - 2526970
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnncc-gctcgtttgctttattaggtttgcaattatttaacctaa 260  Q
    |||| |||||||||||||||||||||       || |||| ||||||||||||||||||||||||||||||||||    
T  2527044 gttaggtctgcagcaatttaacctaatttttttcccgctcatttgctttattaggtttgcaattatttaacctaa 2526970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 19222161 - 19222206
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||    
T  19222161 tttgctttattaggtttacaattatttaacctaacaaattccatct 19222206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 34837243 - 34837288
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||    
T  34837243 tttgctttattaggtttacaattatttaacctaacaaattccatct 34837288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 35124780 - 35124821
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattcc 268  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  35124780 tttgctttattaggtttgcaattatttaacctaacaaattcc 35124821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 40686942 - 40686897
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||    
T  40686942 tttgctttattaggtttgcaattatttaacctaacaaattacatct 40686897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 46264333 - 46264288
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||    
T  46264333 tttgctttattaggtttgcaattatttaacctaacaaattctatct 46264288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 268
Target Start/End: Complemental strand, 11646299 - 11646218
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattcc 268  Q
    |||| ||||||||||| |||||||||       || ||| |||||||| ||||||||||||||||||||||||| |||||||    
T  11646299 gttatgtctgcagcaacttaacctaatttttttccactcatttgctttgttaggtttgcaattatttaacctaacaaattcc 11646218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 16492602 - 16492550
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| |||||||||||| ||||||||||||||||||||| ||||| |||||    
T  16492602 ccgctcatttgctttattatgtttgcaattatttaacctaacaaatttcatct 16492550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 16671294 - 16671346
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| |||||| ||||||||||||||||||||||||||| ||||| |||||    
T  16671294 ccgctcatttgctctattaggtttgcaattatttaacctaacaaatttcatct 16671346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 17645662 - 17645714
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| |||||| ||||||||||||||||||||||||||| ||||| |||||    
T  17645662 ccgctcatttgctctattaggtttgcaattatttaacctaacaaatttcatct 17645714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 260
Target Start/End: Original strand, 21224153 - 21224226
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaa 260  Q
    |||| |||||||||||||||||||||       |||||  ||||||||||||||||| ||||||||||||||||    
T  21224153 gttaggtctgcagcaatttaacctaatttttttccgctaatttgctttattaggtttacaattatttaacctaa 21224226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 48641073 - 48641021
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| ||||||||||||||||||||||||||||||| || ||||| |||||    
T  48641073 ccgctcatttgctttattaggtttgcaattatttaaccaaaaaaatttcatct 48641021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 266
Target Start/End: Complemental strand, 40450191 - 40450112
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaatt 266  Q
    |||| |||||||||||||||||||||         |||| ||||||||||||| |||||||||||||||||||| |||||    
T  40450191 gttaggtctgcagcaatttaacctaatttattcgtgctcatttgctttattagatttgcaattatttaacctaacaaatt 40450112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 48641497 - 48641447
Alignment:
Q  222 gctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| |||||||||||| ||||||||||||||||||||| ||||| |||||    
T  48641497 gctcatttgctttattaagtttgcaattatttaacctaacaaatttcatct 48641447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 2853267 - 2853222
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| ||||||||||||||||||||||||||||| ||||| |||||    
T  2853267 tttgttttattaggtttgcaattatttaacctaacaaatttcatct 2853222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 4681648 - 4681603
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||||||||||||||||||||| ||| ||||| |||||    
T  4681648 tttgctttattaggtttgcaattatttaacttaacaaatttcatct 4681603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 9142190 - 9142150
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaa 260  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  9142190 ccgctcatttgctttatttggtttgcaattatttaacctaa 9142150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 22324299 - 22324384
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| |||||||||||||||||||||       |||||| ||| |||| ||||||||| ||||||| ||||||| ||||| |||||    
T  22324299 gttaggtctgcagcaatttaacctaattgtttcccgctcatttacttttttaggtttgtaattattcaacctaacaaatttcatct 22324384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 34837489 - 34837541
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| ||| ||||||||||||||||||||||| |||||| ||||| |||||    
T  34837489 ccgctcatttactttattaggtttgcaattattttacctaacaaatttcatct 34837541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 22774000 - 22773916
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||| |||||||||||||       |||||| ||||||||| || |||||||||||||||| |||| ||||| |||||    
T  22774000 gttacgtctgcaacaatttaacctaatttttc-ccgctcatttgctttactatgtttgcaattatttaatctaacaaatttcatct 22773916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 268
Target Start/End: Original strand, 21128055 - 21128136
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattcc 268  Q
    |||| |||||||||| ||||||||||       |||||  |||||||||||| |||| || ||||||||||||| |||||||    
T  21128055 gttaggtctgcagcagtttaacctaatctttttccgctgatttgctttattacgtttccatttatttaacctaacaaattcc 21128136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 163893 - 163808
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| ||||||||||||||||||||        |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  163893 gttaggtctgcagcaatttaacctactttttttccgctcatttgctttattaggtttgcaattatttaacctaataaattccatct 163808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 23828218 - 23828133
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| |||||||||||||||||||||       |||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  23828218 gttaggtctgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 23828133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 37198205 - 37198119
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnn-ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||||||||||        |||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  37198205 gttacgtctgcagcaatttaacctaattttttttccgctcatttgctttattaggtttgcaattatttaacctaataaattctatct 37198119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 23085875 - 23085960
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| ||||||| |||||||||||||       || ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23085875 gttaggtctgcaacaatttaacctaattttttcccactcatttgctttattaggtttgcaattatttaacctaataaattccatct 23085960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 39922179 - 39922094
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||||||||||||| |||       |||||| |||| ||||||||||||||||||||||||||||| |||||||||||    
T  39922179 gttacgtctgcagcaatttaacttaattttttcccgctcatttgttttattaggtttgcaattatttaacctaacaaattccatct 39922094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 1197893 - 1197978
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| |||||||||||||||||||||       |||||| |||||||||||||| ||||||||||||||||||| ||||| |||||    
T  1197893 gttaggtctgcagcaatttaacctaatcttttcccgctcatttgctttattagggttgcaattatttaacctaacaaatttcatct 1197978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 3459226 - 3459141
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||||||||||||| |||       |||||| ||||||||||||||||||||||||||||| |||| ||||| |||||    
T  3459226 gttacgtctgcagcaatttaacataattttttcccgctcatttgctttattaggtttgcaattatttaatctaacaaatttcatct 3459141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 27853761 - 27853676
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| ||||| |||||||||||||||       |||||| ||| |||||||||||||||||||||||||||||| |||||||||||    
T  27853761 gttatgtctgtagcaatttaacctaattttttcccgctcatttactttattaggtttgcaattatttaacctaacaaattccatct 27853676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 23960890 - 23960806
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||||||||||       || ||| |||||||||||||||||| ||||||||||||||| |||||||||||    
T  23960890 gttacgtctgcagcaatttaacctaatttttt-ccactcatttgctttattaggtttgtaattatttaacctaacaaattccatct 23960806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 37410162 - 37410078
Alignment:
Q  188 ttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| |||||||||||||| |||       |||||| |||||||||||||||||||||||||||||||||| ||||| |||||    
T  37410162 ttacgtttgcagcaatttaacttaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 37410078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 272
Target Start/End: Original strand, 32062839 - 32062917
Alignment:
Q  194 ctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||||| ||||       |||||| |||||||||||||||||||||||||||||||||| ||||| |||||    
T  32062839 ctgcagcaatttaaactaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 32062917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 23831003 - 23830951
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||| |||||    
T  23831003 ccgctcatttgctttattaggtttgcaattatttaacctaacaaattgcatct 23830951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 37198389 - 37198304
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||| |||||||||||||       |||||| ||||||||||| ||||| ||||| |||||||||| |||||||||||    
T  37198389 gttacgtctgcaacaatttaacctaatttttttccgctcatttgctttattcggttttcaattgtttaacctaacaaattccatct 37198304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 38111392 - 38111444
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| ||||||||||||||||||||||||||||||| || |||||||||||    
T  38111392 ccgctcatttgctttattaggtttgcaattatttaacccaacaaattccatct 38111444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 23838434 - 23838348
Alignment:
Q  187 gttacgtctgcagcaatttaacct-aannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| ||||||||||||||||||| ||       |||||| ||||||||||||| |||||||||||||||||||| ||||| |||||    
T  23838434 gttaggtctgcagcaatttaaccttaattttttcccgctcatttgctttattagttttgcaattatttaacctaacaaattgcatct 23838348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 30439093 - 30439048
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||    
T  30439093 tttgctttattaggtttgcaattatttaacctaacaaatttcatct 30439048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 35617696 - 35617782
Alignment:
Q  187 gttacgtctgca-gcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||| |||||||||| |||       |||||| |||| ||||||||||||||||||||||||||||| |||||| ||||    
T  35617696 gttacgtctgcaagcaatttaacttaattttttcccgctcatttgttttattaggtttgcaattatttaacctaacaaattctatct 35617782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 272
Target Start/End: Complemental strand, 40399574 - 40399500
Alignment:
Q  198 agcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||||||       |||||| |||| ||||||||||||| ||||||||||||||| |||||||||||    
T  40399574 agcaatttaacctaattttttcccgctcatttgttttattaggtttgtaattatttaacctaacaaattccatct 40399500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 34947524 - 34947576
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| |||||||||||||||||| ||||||||||||||| ||||| |||||    
T  34947524 ccgctcatttgctttattaggtttgaaattatttaacctaacaaatttcatct 34947576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 37197952 - 37197912
Alignment:
Q  232 tttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  37197952 tttattaggtttgcaattatttaacctaacaaattccatct 37197912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 266
Target Start/End: Complemental strand, 1276574 - 1276535
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaatt 266  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  1276574 tttgctttattaggtttgcaattatttaacctaacaaatt 1276535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 13797492 - 13797537
Alignment:
Q  222 gctcgtttgctttattaggtttgcaattatttaacctaataaattc 267  Q
    |||| |||||||||||||||||||||||||||||| ||| ||||||    
T  13797492 gctcatttgctttattaggtttgcaattatttaacttaacaaattc 13797537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 272
Target Start/End: Original strand, 3990209 - 3990245
Alignment:
Q  236 ttaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||||||||||||||| |||||    
T  3990209 ttaggtttgcaattatttaacctaataaattacatct 3990245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 272
Target Start/End: Complemental strand, 23960632 - 23960588
Alignment:
Q  228 ttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||||||| |||||||||||||||| ||||| |||||    
T  23960632 ttgctttattaggtttacaattatttaacctaacaaatttcatct 23960588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 29580129 - 29580056
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaa 260  Q
    ||||||| |||| |||||||||||||       |||||| |||| |||||||||||||||||||||||| ||||    
T  29580129 gttacgtatgcatcaatttaacctaattttttcccgctcatttgttttattaggtttgcaattatttaaactaa 29580056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 33198848 - 33198933
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| |||||||||||||||||||||       |||||| |||||| |||||||||  || | ||||||||||| |||||||||||    
T  33198848 gttaggtctgcagcaatttaacctaatatttttccgctcatttgctgtattaggttaacagtgatttaacctaacaaattccatct 33198933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 265
Target Start/End: Complemental strand, 18308296 - 18308258
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaat 265  Q
    |||||||||||||||| ||||||||||||||||| ||||    
T  18308296 tttgctttattaggttcgcaattatttaacctaacaaat 18308258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 37426166 - 37426216
Alignment:
Q  222 gctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| ||| ||||||||||||||||||| |||||| ||| |||||||||||    
T  37426166 gctcatttactttattaggtttgcaattgtttaacataacaaattccatct 37426216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 44429105 - 44429150
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||||||  ||||| ||||||||||| |||||||||||    
T  44429105 tttgctttattaggtaagcaataatttaacctaacaaattccatct 44429150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 48076205 - 48076290
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||||| ||||       |||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  48076205 gttacgtctgcagcaatttaatctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 48076290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 48076383 - 48076468
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||||||||||       |||||| |||||||||||||||||||||||||||||||||| ||||| |||||    
T  48076383 gttacgtctgcagcaatttaacctaatttttccccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 48076468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 23952595 - 23952512
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccat 270  Q
    ||||||||||||||||||||||||||        ||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  23952595 gttacgtctgcagcaatttaacctaattttttcacgctcatttgctttattaggtttgcaattatttaacctaaaaaattccat 23952512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 23952871 - 23952786
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||||||||||       |||||| |||| ||||||||||||||||||||||||| ||| |||||||||||    
T  23952871 gttacgtctgcagcaatttaacctaatttttttccgctcatttgttttattaggtttgcaattatttaacttaacaaattccatct 23952786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 44500687 - 44500772
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| |||||||||||||||||||||       |||||| |||||||||||||||||||||||||||||| ||| |||||||||||    
T  44500687 gttaggtctgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacgtaacaaattccatct 44500772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 47768967 - 47769052
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||||||||||       |||||| ||||||| |||||||||||||||||||||||||| ||||| |||||    
T  47768967 gttacgtctgcagcaatttaacctaatttttttccgctcatttgcttcattaggtttgcaattatttaacctaacaaatttcatct 47769052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 22292918 - 22292993
Alignment:
Q  192 gtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattc 267  Q
    |||||||||||||||||||||       |||||| |||||||||||||||||||||||||||||||||| ||||||    
T  22292918 gtctgcagcaatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaattc 22292993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 36639187 - 36639272
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||| || |||||||||||||||       |||||| |||||||||||||||||||||||||||||||||| ||||| |||||    
T  36639187 gttacgtttgtagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 36639272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 43161831 - 43161746
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||| |||||||||||||       |||||| ||||| |||||||||||||||||||||||||||| ||||| |||||    
T  43161831 gttacgtctgcaacaatttaacctaattttttcccgctcatttgcattattaggtttgcaattatttaacctaacaaatttcatct 43161746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 48076560 - 48076645
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||| ||||||||||||||||||       |||||  ||||||||||||||||| |||||||||||||||| |||||||||||    
T  48076560 gttacgtttgcagcaatttaacctaatttttttccgctaatttgctttattaggtttacaattatttaacctaacaaattccatct 48076645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 54653740 - 54653655
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||| |||||||||||||       |||||| |||||||||||||||||||| ||||||||||||| |||||| ||||    
T  54653740 gttacgtctgcatcaatttaacctaattttttcccgctcatttgctttattaggtttgcagttatttaacctaacaaattcaatct 54653655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 272
Target Start/End: Complemental strand, 53144930 - 53144851
Alignment:
Q  193 tctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||||       |||||| |||||||||||||||||| ||||||||||||||| ||||| |||||    
T  53144930 tctgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgtaattatttaacctaacaaatttcatct 53144851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 4941726 - 4941778
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||| |||||    
T  4941726 ccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 4941778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 8118612 - 8118697
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| ||||||| |||||||||||||       |||||| |||||||||||||| ||||||||||||||||||| ||||| |||||    
T  8118612 gttaggtctgcaacaatttaacctaatttttttccgctcatttgctttattagggttgcaattatttaacctaacaaatttcatct 8118697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 8397833 - 8397748
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| |||||||||||||||||||||       | ||||||||| ||||||||||||||||||||||||| ||| ||||| |||||    
T  8397833 gttaggtctgcagcaatttaacctaatttttttctgctcgtttgttttattaggtttgcaattatttaacttaacaaatttcatct 8397748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 22292739 - 22292791
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| |||||||||||||||||||||||||||||||||| |||| ||||||    
T  22292739 ccgctcatttgctttattaggtttgcaattatttaacctaacaaataccatct 22292791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 28379852 - 28379779
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaa 260  Q
    |||| ||||||| |||||||||||||       |||||| ||||||||||||||||||||||||||||||||||    
T  28379852 gttaggtctgcatcaatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaa 28379779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 28389829 - 28389777
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| |||||||||||||||||||| ||||||||||||| |||||||||||    
T  28389829 ccgctcatttgctttattaggtttgcatttatttaacctaacaaattccatct 28389777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 272
Target Start/End: Original strand, 8118430 - 8118481
Alignment:
Q  221 cgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||| |||||    
T  8118430 cgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 8118481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 21581333 - 21581282
Alignment:
Q  221 cgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||| |||||    
T  21581333 cgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 21581282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 187 - 266
Target Start/End: Original strand, 7796800 - 7796879
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaatt 266  Q
    |||| |||||||||||||||||||||       |||||| |||||||||||||| ||| ||||||||||||||| |||||    
T  7796800 gttaggtctgcagcaatttaacctaatttttttccgctcatttgctttattaggattgtaattatttaacctaacaaatt 7796879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 8079354 - 8079395
Alignment:
Q  231 ctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  8079354 ctttattaggtttgcaattatttaacctaacaaattccatct 8079395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 272
Target Start/End: Complemental strand, 12796200 - 12796126
Alignment:
Q  198 agcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||||||       |||||| |||| |||||||||||||||||||||||| |||| |||||||||||    
T  12796200 agcaatttaacctaatttttttccgctcatttgttttattaggtttgcaattatttaatctaacaaattccatct 12796126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 270
Target Start/End: Complemental strand, 43161982 - 43161933
Alignment:
Q  221 cgctcgtttgctttattaggtttgcaattatttaacctaataaattccat 270  Q
    ||||| |||||||||||||||||||||||||||||| ||| |||||||||    
T  43161982 cgctcatttgctttattaggtttgcaattatttaacttaacaaattccat 43161933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 47631588 - 47631633
Alignment:
Q  222 gctcgtttgctttattaggtttgcaattatttaacctaataaattc 267  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||    
T  47631588 gctcttttgctttattaggtttgcaattatttaacctaacaaattc 47631633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 2177312 - 2177364
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| |||||||||||||||||||||||| ||||||||| ||||| |||||    
T  2177312 ccgctcatttgctttattaggtttgcaattacttaacctaacaaatttcatct 2177364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 272
Target Start/End: Original strand, 7821326 - 7821403
Alignment:
Q  195 tgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||       |||| | ||||||||||||   |||||||||||||||||||||||||||||||    
T  7821326 tgcagcaatttaacctaattttttcccgcccatttgctttattaatgttgcaattatttaacctaataaattccatct 7821403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 21585647 - 21585562
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||| ||||||||| |||       || ||| |||||||||||||||||||||||||||||| ||| ||||| |||||    
T  21585647 gttacgtctgcaacaatttaacttaatttttttcctctcatttgctttattaggtttgcaattatttaacttaacaaatttcatct 21585562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 24049613 - 24049653
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaa 260  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  24049613 ccgctcatttgctttattaggtttgcaattatttaacctaa 24049653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 52689676 - 52689624
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| |||||||||||||||||| ||||||||||||||| ||||| |||||    
T  52689676 ccgctcatttgctttattaggtttgtaattatttaacctaacaaatttcatct 52689624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 28380028 - 28379981
Alignment:
Q  222 gctcgtttgctttattaggtttgcaattatttaacctaataaattcca 269  Q
    |||| |||| ||||||||||||||||||||||||||||| ||||||||    
T  28380028 gctcatttgttttattaggtttgcaattatttaacctaacaaattcca 28379981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 2481739 - 2481657
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||| ||| |||||||||       |||||| ||||||||||||||||||||   ||||||||||| |||||||||||    
T  2481739 gttacgtctgcaacaacttaacctaattttttcccgctcatttgctttattaggtttgca---atttaacctaacaaattccatct 2481657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 7809398 - 7809448
Alignment:
Q  222 gctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| |||||||||||||||||| ||||||||||||||| ||||| |||||    
T  7809398 gctcatttgctttattaggtttgtaattatttaacctaaaaaatttcatct 7809448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 24049338 - 24049383
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||||||||||||||||||||||| | ||||| |||||    
T  24049338 tttgctttattaggtttgcaattatttaacctgacaaatttcatct 24049383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 47631415 - 47631460
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||| ||||||||||||||||||||||||| ||||| |||||    
T  47631415 tttgctttgttaggtttgcaattatttaacctaacaaatttcatct 47631460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 7821534 - 7821619
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| ||||| |||||||||||||||       | |||| |||||||||||||||||| ||||||||||||||  ||||| |||||    
T  7821534 gttaggtctggagcaatttaacctaattttttactgctcatttgctttattaggtttgtaattatttaacctacaaaatttcatct 7821619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 28813272 - 28813324
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| |||||||||||||||||| |||||||||||| || ||||| |||||    
T  28813272 ccgctcatttgctttattaggtttgtaattatttaaccaaacaaatttcatct 28813324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 29967227 - 29967279
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| |||| |||||||| ||||||||||| |||||||| |||||||||||    
T  29967227 ccgctcatttgttttattagatttgcaattatataacctaacaaattccatct 29967279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 272
Target Start/End: Original strand, 36639368 - 36639445
Alignment:
Q  195 tgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||       ||| || ||| |||||||||| ||||||||||||||||||| ||||| |||||    
T  36639368 tgcagcaatttaacctaattttttcccgttcattttctttattaggattgcaattatttaacctaacaaatttcatct 36639445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 7809582 - 7809632
Alignment:
Q  222 gctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| ||||||||||||| |||| ||||||||||||||| ||||| |||||    
T  7809582 gctcatttgctttattagatttgtaattatttaacctaaaaaatttcatct 7809632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 32010774 - 32010688
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacct-aataaattccatct 272  Q
    ||||||||||||| ||||||| ||||       |||||| ||| |||||||||||||| |||||||| |||| || |||||||||||    
T  32010774 gttacgtctgcagtaatttaaactaatttttttccgctcattttctttattaggtttgtaattattttacctaaacaaattccatct 32010688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 272
Target Start/End: Complemental strand, 41852188 - 41852151
Alignment:
Q  235 attaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  41852188 attaggtttgcaattatttaacctaacaaatttcatct 41852151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 8479200 - 8479149
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| ||||||||||||| |||||||||| ||||||||| ||||| |||||    
T  8479200 ccgctcatttgctttattagatttgcaatta-ttaacctaacaaatttcatct 8479149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 11454578 - 11454663
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||||||||||       |||||| |||||||||||||||||||||| ||||||||||| |||||||||||    
T  11454578 gttacgtctgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaatcatttaacctaacaaattccatct 11454663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 36643218 - 36643133
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||| ||||||||||||||||||       |||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  36643218 gttacgtatgcagcaatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 36643133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 43017286 - 43017371
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||||||||||       |||||| |||||||||||| ||||||||||||||||||||| ||||| |||||    
T  43017286 gttacgtctgcagcaatttaacctaattttttcccgctcatttgctttattaagtttgcaattatttaacctaacaaatttcatct 43017371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 46451485 - 46451570
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||| ||||||||||||       ||| || |||||||||||||||||||||||||||||||||| |||||||||||    
T  46451485 gttacgtctgcagtaatttaacctaattttttcccgttcatttgctttattaggtttgcaattatttaacctaacaaattccatct 46451570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 47503144 - 47503059
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||||||||||       |||||| ||||| |||||||||||||||||||||||||||| ||||| |||||    
T  47503144 gttacgtctgcagcaatttaacctaattttttcccgctcatttgcattattaggtttgcaattatttaacctaacaaatttcatct 47503059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 272
Target Start/End: Complemental strand, 837289 - 837209
Alignment:
Q  192 gtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||| |||||||||||||       |||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  837289 gtctgcaacaatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 837209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 271
Target Start/End: Original strand, 37760512 - 37760596
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatc 271  Q
    |||||||||||| |||||||||||||       |||||| |||||||||||||||||||||||||||||||||| ||||| ||||    
T  37760512 gttacgtctgcaacaatttaacctaaatttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatc 37760596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 187 - 266
Target Start/End: Complemental strand, 38887456 - 38887377
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaatt 266  Q
    |||| |||||||||||||||||||||       |||||| |||||||||||||||||||||||||||||||||| |||||    
T  38887456 gttaggtctgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatt 38887377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 18094971 - 18095056
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| ||||||| |||||||||||||       |||||| |||||||||||||||||||||| ||||||||||| |||||||||||    
T  18094971 gttaggtctgcatcaatttaacctaattttttcccgctcatttgctttattaggtttgcaatgatttaacctaacaaattccatct 18095056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 193 - 267
Target Start/End: Original strand, 40050871 - 40050945
Alignment:
Q  193 tctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattc 267  Q
    ||||||||||||||||||||       |||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  40050871 tctgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaataatttaacctaacaaattc 40050945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 38887636 - 38887588
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattcc 268  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||    
T  38887636 ccgctcatttgctttattaggtttgcaattatttaacctaacaaattcc 38887588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 47503284 - 47503232
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||| |||||    
T  47503284 ccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 47503232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 187 - 270
Target Start/End: Original strand, 18094756 - 18094839
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccat 270  Q
    |||| ||||||||||||||||| |||       |||||  |||||||||||||||||||||||||||||||||| |||| ||||    
T  18094756 gttaggtctgcagcaatttaacttaattttttcccgctaatttgctttattaggtttgcaattatttaacctaacaaatcccat 18094839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 267
Target Start/End: Complemental strand, 38887881 - 38887806
Alignment:
Q  192 gtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattc 267  Q
    |||||||| ||||||||||||       |||||| |||||||||||||||||||||||||||||| ||| ||||||    
T  38887881 gtctgcagtaatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttaacgtaacaaattc 38887806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 187 - 266
Target Start/End: Complemental strand, 53047678 - 53047599
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaatt 266  Q
    |||| ||||||||||||||||| |||       |||||| |||||||| ||||||||||||||||||||||||| |||||    
T  53047678 gttaggtctgcagcaatttaacataattttttcccgctcatttgctttgttaggtttgcaattatttaacctaacaaatt 53047599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 11453993 - 11454038
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||    
T  11453993 tttgctttattaggtttgcaattatttaacctaacaaattacatct 11454038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 301
Target Start/End: Original strand, 46451331 - 46451412
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatctnnnnnnnntgcatcgcaccaattttattc 301  Q
    |||||| ||||||||||||| |||||||||||||||||||| ||||| |||||        |||||||||||||||| ||||    
T  46451331 ccgctcatttgctttattagatttgcaattatttaacctaacaaatttcatctaaaaaaaatgcatcgcaccaatttcattc 46451412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 35560157 - 35560201
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattccatc 271  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||    
T  35560157 tttgctttattaggtttgcaattatttaacctaacaaatttcatc 35560201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 45514509 - 45514425
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||||| ||||       ||| || ||| ||||||||| |||||||||||||||||||||||||| |||||    
T  45514509 gttacgtctgcagcaatttaatctaattttttcccgttcatttactttattag-tttgcaattatttaacctaataaatttcatct 45514425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 260
Target Start/End: Original strand, 54274787 - 54274820
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaa 260  Q
    ||||||||||||||||||||||||||||||||||    
T  54274787 tttgctttattaggtttgcaattatttaacctaa 54274820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 11454220 - 11454305
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| ||||||| |||||||||||||       |||||| | | ||||||| |||||||||||||||||||||| ||||| |||||    
T  11454220 gttatgtctgcaacaatttaacctaattttttcccgctcatctactttatttggtttgcaattatttaacctaacaaatttcatct 11454305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 301
Target Start/End: Original strand, 11454399 - 11454512
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatctnnnnnnnntgcatc 286  Q
    |||||||||||||||||||| |||||       | |||| |||||||||||||| ||||||||||||||||||| ||| | |||||        ||||||    
T  11454399 gttacgtctgcagcaatttatcctaatttttt-ctgctcatttgctttattaggcttgcaattatttaacctaacaaacttcatctaaaaaaaatgcatc 11454497  T
Q  287 gcaccaattttattc 301  Q
    |||||||||| ||||    
T  11454498 gcaccaatttcattc 11454512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 16015308 - 16015256
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| ||||||||||||||||  |||||||||||||||| |||||| ||||    
T  16015308 ccgctcatttgctttattaggttaacaattatttaacctaacaaattctatct 16015256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 24365782 - 24365822
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaa 260  Q
    |||||| |||| |||||||||||||||||||||||||||||    
T  24365782 ccgctcatttgatttattaggtttgcaattatttaacctaa 24365822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 47519937 - 47519872
Alignment:
Q  195 tgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaa 260  Q
    ||||||||||||||||||       |||||| |||||||||||| ||||| |||||||||||||||    
T  47519937 tgcagcaatttaacctaattttttcccgctcatttgctttattaagtttgtaattatttaacctaa 47519872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 47519974 - 47520014
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaa 260  Q
    |||||| |||||||||||||| |||||||||||||||||||    
T  47519974 ccgctcatttgctttattagggttgcaattatttaacctaa 47520014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 266
Target Start/End: Original strand, 51654092 - 51654138
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaatt 266  Q
    |||||| |||| |||||||||||| |||||||||||||||| |||||    
T  51654092 ccgctcatttgttttattaggtttacaattatttaacctaacaaatt 51654138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 20877307 - 20877222
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||||| ||||       || ||| ||| ||||||||||||||   ||||||||||||| ||||| |||||    
T  20877307 gttacgtctgcagcaatttaatctaattttttccctctcatttactttattaggtttgtcgttatttaacctaacaaatttcatct 20877222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 318570 - 318655
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||||| ||||       |||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  318570 gttacgtctgcagcaatttaatctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 318655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 1156156 - 1156071
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| |||||||||||||||||||       |||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  1156156 gttacggctgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 1156071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 27296177 - 27296262
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||| |||||||||||||       |||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  27296177 gttacgtctgcaacaatttaacctaatttttccccgcttatttgctttattaggtttgcaattatttaacctaataaattccatct 27296262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 51114105 - 51114190
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||| |||||||||||||||       |||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  51114105 gttacgtctgtagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 51114190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 187 - 301
Target Start/End: Complemental strand, 42492256 - 42492142
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatctnnnnnnnntgcatc 286  Q
    |||| |||||||||||||||||||||       || ||| |||||||||||||||||||||||||||||||||| |||||||||||        ||||||    
T  42492256 gttaggtctgcagcaatttaacctaattttttcccactcatttgctttattaggtttgcaattatttaacctaacaaattccatctaaaaaaaatgcatc 42492157  T
Q  287 gcaccaattttattc 301  Q
    |||||||||| ||||    
T  42492156 gcaccaatttcattc 42492142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 5428543 - 5428628
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| |||||||||||||||||||||       |||||| |||||||||||||||||||||||||||||||||| ||||| |||||    
T  5428543 gttaggtctgcagcaatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 5428628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 44263104 - 44263189
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| |||||||||||||||||||||       ||| || |||||||||||||||||||||||||||||||||| |||||||||||    
T  44263104 gttaagtctgcagcaatttaacctaattttttcccgttcatttgctttattaggtttgcaattatttaacctaacaaattccatct 44263189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 51113921 - 51114006
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||||||||||       ||| || ||| |||||||||||||||||||||||||||||| |||||||||||    
T  51113921 gttacgtctgcagcaatttaacctaattttttcccgttcatttactttattaggtttgcaattatttaacctaacaaattccatct 51114006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 272
Target Start/End: Complemental strand, 42497377 - 42497297
Alignment:
Q  192 gtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||||||||||||       |||||| |||||||||||||||||||||||||||||||||| ||||| |||||    
T  42497377 gtctgcagcaatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 42497297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 187 - 301
Target Start/End: Original strand, 51113738 - 51113852
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatctnnnnnnnntgcatc 286  Q
    ||||||| ||||||||||||||||||       |||||| ||||||||||||| |||||||||||||||||||| ||||| |||||        ||||||    
T  51113738 gttacgtttgcagcaatttaacctaatttttttccgctcatttgctttattagatttgcaattatttaacctaacaaatttcatctaaaaaaaatgcatc 51113837  T
Q  287 gcaccaattttattc 301  Q
    |||||||||| ||||    
T  51113838 gcaccaatttcattc 51113852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 222 - 271
Target Start/End: Complemental strand, 51272548 - 51272499
Alignment:
Q  222 gctcgtttgctttattaggtttgcaattatttaacctaataaattccatc 271  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  51272548 gctcatttgctttattaggtttgcaattatttaacctaataaattccatc 51272499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 272
Target Start/End: Original strand, 38684038 - 38684115
Alignment:
Q  195 tgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||       |||||| ||||||||||||||||||| |||||||||||||| |||||||||||    
T  38684038 tgcagcaatttaacctaatttttttccgctcatttgctttattaggtttgcgattatttaacctaacaaattccatct 38684115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 42497024 - 42496939
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| |||||||||||||||||||||       |||||| |||| |||||||| |||||||||||||||||||| |||||||||||    
T  42497024 gttaggtctgcagcaatttaacctaattttttcccgctcatttgttttattagatttgcaattatttaacctaacaaattccatct 42496939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 44262679 - 44262764
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| |||||||||||||||||||||       || ||| |||||||||||| ||||||||||||||||||||| |||||||||||    
T  44262679 gttaggtctgcagcaatttaacctaatttttttccactcatttgctttattacgtttgcaattatttaacctaacaaattccatct 44262764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 3227280 - 3227229
Alignment:
Q  221 cgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  3227280 cgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 3227229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 187 - 263
Target Start/End: Complemental strand, 28950350 - 28950274
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataa 263  Q
    ||||||||| ||||||||||||||||       |||||  |||||||||||||||||||||||||||||||||||||    
T  28950350 gttacgtctccagcaatttaacctaattttttcccgctaatttgctttattaggtttgcaattatttaacctaataa 28950274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 44099727 - 44099676
Alignment:
Q  221 cgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  44099727 cgctcatttgctttattaggtttgcaattatttaacctaataaatttcatct 44099676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 187 - 301
Target Start/End: Complemental strand, 16165777 - 16165663
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatctnnnnnnnntgcatc 286  Q
    |||| ||||| |||||||||||||||       ||| || |||||||||||||||||||||||||||||||||| ||||| |||||        ||||||    
T  16165777 gttaggtctgtagcaatttaacctaattttttcccgatcatttgctttattaggtttgcaattatttaacctaacaaatttcatctaaaaaaaatgcatc 16165678  T
Q  287 gcaccaattttattc 301  Q
    |||||||||| ||||    
T  16165677 gcaccaatttcattc 16165663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 5429108 - 5429152
Alignment:
Q  228 ttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  5429108 ttgctttattaggtttgcaattatttaacctaacaaattccatct 5429152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 6537713 - 6537661
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| ||| |||||||||||||||||||||||||||||| |||||||||||    
T  6537713 ccgctcatttactttattaggtttgcaattatttaacctaacaaattccatct 6537661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 21617804 - 21617856
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||| |||||    
T  21617804 ccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 21617856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 27296352 - 27296437
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||| |||||||||||||        ||||| ||| |||||||||||||||||||||||||||||| ||||| |||||    
T  27296352 gttacgtctgcaacaatttaacctaattttttctcgctcattttctttattaggtttgcaattatttaacctaacaaatttcatct 27296437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 272
Target Start/End: Original strand, 5428954 - 5429033
Alignment:
Q  193 tctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||| ||||       |||||| | ||||||||||||||||||||||||||| |||| |||||||||||    
T  5428954 tctgcagcaatttaaactaatttttttccgctcatctgctttattaggtttgcaattatttaagctaacaaattccatct 5429033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 42497162 - 42497117
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||    
T  42497162 tttgctttattaggtttacaattatttaacataataaattccatct 42497117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 1647558 - 1647643
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| |||||||||| ||||||||||       | |||| |||||||||||||||||| ||||||||||||||| ||||| |||||    
T  1647558 gttaggtctgcagcagtttaacctaagttttttctgctcatttgctttattaggtttggaattatttaacctaacaaatttcatct 1647643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 260
Target Start/End: Original strand, 33375645 - 33375718
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaa 260  Q
    |||||||||  |||||||||||||||       |||||| ||| ||||||||||||||||||||||||||||||    
T  33375645 gttacgtctcaagcaatttaacctaatttttctccgctcatttactttattaggtttgcaattatttaacctaa 33375718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 265
Target Start/End: Original strand, 24595278 - 24595321
Alignment:
Q  222 gctcgtttgctttattaggtttgcaattatttaacctaataaat 265  Q
    |||| |||||||||||||||||||||||||||||||||| ||||    
T  24595278 gctcatttgctttattaggtttgcaattatttaacctaaaaaat 24595321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 266
Target Start/End: Complemental strand, 45417651 - 45417612
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaatt 266  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  45417651 tttgctttattaggtttgcaattatttaacctaacaaatt 45417612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 271
Target Start/End: Original strand, 44263359 - 44263409
Alignment:
Q  221 cgctcgtttgctttattaggtttgcaattatttaacctaataaattccatc 271  Q
    ||||| ||||| |||||||||||||||||||||||||||| ||||| ||||    
T  44263359 cgctcatttgccttattaggtttgcaattatttaacctaacaaattacatc 44263409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 301
Target Start/End: Original strand, 52740726 - 52740829
Alignment:
Q  198 agcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatctnnnnnnnntgcatcgcaccaatttt 297  Q
    |||||||||||||||       |||||| ||||||||||||||||| |||||||||||| ||| |||||| ||||        ||||||||||||||||     
T  52740726 agcaatttaacctaattttttcccgctcatttgctttattaggtttacaattatttaacttaacaaattcaatctaaaaaaaatgcatcgcaccaatttc 52740825  T
Q  298 attc 301  Q
    ||||    
T  52740826 attc 52740829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 12115360 - 12115405
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||||||||| ||||||||||||||| ||||| |||||    
T  12115360 tttgctttattaggtttggaattatttaacctaacaaatttcatct 12115405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 28950078 - 28950016
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaatt 249  Q
    |||||||||||| |||||||||||||       |||||| |||||||||||||||||||||||    
T  28950078 gttacgtctgcaacaatttaacctaatttttttccgctcatttgctttattaggtttgcaatt 28950016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 30084034 - 30084079
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||||||||| ||||||||||||  |||||||||||||    
T  30084034 tttgctttattaggtttgaaattatttaaccatataaattccatct 30084079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 4100883 - 4100798
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| |||||||||||||||| ||||       |||||| || | |||||||| |||||||||||||||||||| ||||| |||||    
T  4100883 gttaggtctgcagcaatttaatctaatttttttccgctcattagttttattagatttgcaattatttaacctaaaaaatttcatct 4100798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 266
Target Start/End: Complemental strand, 28949943 - 28949904
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaatt 266  Q
    |||||||||||||||||| ||||||||||||||| |||||    
T  28949943 tttgctttattaggtttgtaattatttaacctaacaaatt 28949904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 18912342 - 18912428
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttg-caattatttaacctaataaattccatct 272  Q
    |||| |||||||||||||||||||||       |||| | ||||||||||||||||||  ||||||||||| ||| ||||| |||||    
T  18912342 gttatgtctgcagcaatttaacctaatttttttccgcccatttgctttattaggtttgtaaattatttaacttaacaaatttcatct 18912428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 28950221 - 28950176
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||| |||| ||||||||||||||| ||||| |||||    
T  28950221 tttgctttattagatttgaaattatttaacctaacaaatttcatct 28950176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 52584989 - 52585034
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||| ||||| ||||||||||||||| ||||| |||||    
T  52584989 tttgctttattaagtttgtaattatttaacctaacaaatttcatct 52585034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 11313994 - 11314080
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnn-ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||||||||||        |||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  11313994 gttacgtctgcagcaatttaacctaattttttttccgctcatttgctttattaggtttgcaattatttaacctaaaaaattccatct 11314080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 11313817 - 11313902
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||| |||||||||||||       |||| | ||| |||||||||||||||||||||||||||||| |||||||||||    
T  11313817 gttacgtctgcaacaatttaacctaattttttcccgcacattttctttattaggtttgcaattatttaacctaacaaattccatct 11313902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 12442243 - 12442158
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| |||||||||||||||||||||       |||||| ||||| |||||||||||||||||||||||||||| ||||| |||||    
T  12442243 gttaggtctgcagcaatttaacctaattttttcccgctcatttgccttattaggtttgcaattatttaacctaacaaattacatct 12442158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 16305394 - 16305446
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  16305394 ccgctcatttgctttattaggtttgcaattatttaatctaataaattccatct 16305446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 16528615 - 16528700
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||| || |||||||||||||       |||||| |||||||||||||||||||||||||||||||||| |||||| ||||    
T  16528615 gttacgtctacaacaatttaacctaacattttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattctatct 16528700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 16528796 - 16528881
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||||||||||       |||||| ||||| ||||||||||||||| |||||||||||| || ||||||||    
T  16528796 gttacgtctgcagcaatttaacctaattttttcccgctcatttgccttattaggtttgcaaatatttaacctaacaacttccatct 16528881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 16529150 - 16529235
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||||||||||        ||||| ||||||||||||| |||||||||||||||| ||| |||||||||||    
T  16529150 gttacgtctgcagcaatttaacctaattttttcgcgctcatttgctttattagatttgcaattatttaacgtaacaaattccatct 16529235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 43395044 - 43394959
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||| ||||||||||||||||||       | |||| |||||||||||||||||||||||||||||||||| ||||| |||||    
T  43395044 gttacgtttgcagcaatttaacctaattttttcctgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 43394959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 270
Target Start/End: Original strand, 16526213 - 16526296
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccat 270  Q
    |||||||||||| |||||||||||||        | ||| |||||||||||||||||||||||||||||||||| |||||||||    
T  16526213 gttacgtctgcatcaatttaacctaattttttttcactcatttgctttattaggtttgcaattatttaacctaacaaattccat 16526296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 266
Target Start/End: Original strand, 35159719 - 35159797
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaatt 266  Q
    |||||||||||||||||||||||||        |||||| |||||||||||||||||||||||||||||||||| |||||    
T  35159719 gttacgtctgcagcaatttaaccta-ttttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatt 35159797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 7127574 - 7127659
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||| ||||||||||||||||||       | |||| ||||||| ||||||||||||||||||||| |||| |||||||||||    
T  7127574 gttacgtttgcagcaatttaacctaattttttcctgctcatttgcttgattaggtttgcaattatttaaactaacaaattccatct 7127659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 26523250 - 26523165
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| ||||||| |||||||||||||       |||||| ||||||||||||||||||||||||||| | |||| |||||||||||    
T  26523250 gttatgtctgcatcaatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttgatctaacaaattccatct 26523165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 11313656 - 11313740
Alignment:
Q  188 ttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||| || |||||||||||||       |||||| ||| |||||||||||||||||||||||||||||| |||||| ||||    
T  11313656 ttacgtctacaacaatttaacctaattttttcccgctcattttctttattaggtttgcaattatttaacctaacaaattctatct 11313740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 272
Target Start/End: Complemental strand, 24351557 - 24351477
Alignment:
Q  192 gtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||| ||||||||||||       |||||| |||| ||||||||||||||||||||||||||||| ||||| |||||    
T  24351557 gtctgcagtaatttaacctaattatttcccgctcatttgttttattaggtttgcaattatttaacctaacaaatttcatct 24351477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 41092948 - 41092901
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattc 267  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||    
T  41092948 ccgctcttttgctttattaggtttgcaattatttaacctaacaaattc 41092901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 7673310 - 7673224
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnncc-gctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||||||||||       || | || |||| ||||||||||||||||||||||||||||| ||||| |||||    
T  7673310 gttacgtctgcagcaatttaacctaatttttttcccgttcatttgttttattaggtttgcaattatttaacctaacaaatttcatct 7673224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 266
Target Start/End: Original strand, 16528974 - 16529051
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaatt 266  Q
    ||||||||||||||||||||||||||       | |||| ||||| |||||||||||||||||||||||||||| |||||    
T  16528974 gttacgtctgcagcaatttaacctaattttc--ctgctcatttgccttattaggtttgcaattatttaacctaacaaatt 16529051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 35159472 - 35159517
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||    
T  35159472 tttgctttattaggtttgcaattatttaacctaaccaattccatct 35159517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 9488160 - 9488075
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||| |||||||||||||       ||| |  ||||||||||||| |||||||||||||||||||| ||||| |||||    
T  9488160 gttacgtctgcaacaatttaacctaatttttttccgtttatttgctttattagatttgcaattatttaacctaacaaatttcatct 9488075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 24350976 - 24350924
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| |||| ||||||||||||||||||||||||||||| ||||| |||||    
T  24350976 ccgctcatttgttttattaggtttgcaattatttaacctaacaaatttcatct 24350924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 41093120 - 41093080
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattc 267  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  41093120 tttgctttattaggtttgcaattatttaacctaacaaattc 41093080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 270
Target Start/End: Complemental strand, 14166233 - 14166190
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattccat 270  Q
    |||||||||||| ||||||||||||||||||||| |||||||||    
T  14166233 tttgctttattatgtttgcaattatttaacctaacaaattccat 14166190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 24326545 - 24326609
Alignment:
Q  192 gtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaac 256  Q
    ||||||| |||||||||||||       |||||| ||||||||||||||||||||||||||||||    
T  24326545 gtctgcaacaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaac 24326609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 24350796 - 24350732
Alignment:
Q  192 gtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaac 256  Q
    ||||||| |||||||||||||       |||||| ||||||||||||||||||||||||||||||    
T  24350796 gtctgcaacaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaac 24350732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 24351350 - 24351286
Alignment:
Q  192 gtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaac 256  Q
    ||||||| |||||||||||||       |||||| ||||||||||||||||||||||||||||||    
T  24351350 gtctgcaacaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaac 24351286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 266
Target Start/End: Complemental strand, 43395188 - 43395142
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaatt 266  Q
    |||||| ||||||||||||||||| |||||||||||||||| |||||    
T  43395188 ccgctcatttgctttattaggtttccaattatttaacctaacaaatt 43395142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 19121962 - 19122007
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||||||| |||||||||| |||||| ||||    
T  19121962 tttgctttattaggtttgcaattgtttaacctaacaaattctatct 19122007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 19122298 - 19122343
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||||||| |||||||||| |||||| ||||    
T  19122298 tttgctttattaggtttgcaattgtttaacctaacaaattctatct 19122343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 265
Target Start/End: Complemental strand, 26523346 - 26523268
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaat 265  Q
    |||| ||||||| |||||||||||||       |||||  ||||||||||||||||||||||||||| |||||| ||||    
T  26523346 gttatgtctgcatcaatttaacctaattttttcccgcttatttgctttattaggtttgcaattatttgacctaacaaat 26523268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 23138079 - 23138131
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| ||||||||||||||||||||||||| |||| ||| || ||||||||    
T  23138079 ccgctcatttgctttattaggtttgcaattatataacgtaacaagttccatct 23138131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 31487174 - 31487089
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| |||||||| ||||||||||||       |||||| |||||| ||||||||| ||| | ||||||||||| ||||| |||||    
T  31487174 gttaggtctgcagtaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaacctaacaaatttcatct 31487089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 10129588 - 10129503
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| |||||||||||||||||||||        ||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  10129588 gttaggtctgcagcaatttaacctaatttgttctcgctcatttgctttattaggtttgcaattatttaacctaataaattctatct 10129503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 28611899 - 28611814
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| |||||||||||||||||||||       |||||| ||||||| |||||||||||||||||||||||||| || ||||||||    
T  28611899 gttaggtctgcagcaatttaacctaattttttcccgctcatttgcttgattaggtttgcaattatttaacctaacaagttccatct 28611814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 28612291 - 28612239
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  28612291 ccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 28612239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 41995804 - 41995759
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  41995804 tttgctttattaggtttgcaattatttaacctaacaaattccatct 41995759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 5001757 - 5001705
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||| |||||    
T  5001757 ccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 5001705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 29549839 - 29549891
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||| |||||    
T  29549839 ccgctcatttgctttattaggtttacaattatttaacctaataaatttcatct 29549891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 44256488 - 44256573
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||| |||||||||||||||||||||       |||||| ||| ||||||||||||| ||| |||||||||||||||||| |||||    
T  44256488 gttaggtctgcagcaatttaacctaattttttcccgctcattttctttattaggttttcaagtatttaacctaataaatttcatct 44256573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 44543806 - 44543721
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||| ||| |||||||||||||       |||||| ||||||||||| |||||||||||||||||||||| |||||| ||||    
T  44543806 gttacgtccgcaacaatttaacctaatttttccccgctcatttgctttatttggtttgcaattatttaacctaaaaaattctatct 44543721  T

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Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 5001431 - 5001380
Alignment:
Q  221 cgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||| |||||||||||||||||||||||||||||||||| || ||||||||    
T  5001431 cgctcatttgctttattaggtttgcaattatttaacctaaaaagttccatct 5001380  T

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Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 5013101 - 5013050
Alignment:
Q  221 cgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||| |||||||||||||||||||||||||||||||||| || ||||||||    
T  5013101 cgctcatttgctttattaggtttgcaattatttaacctaaaaagttccatct 5013050  T

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Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 5013287 - 5013219
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaa 255  Q
    ||||||||||||||||||||||||||       |||||| ||||||||||||||||| |||||||||||    
T  5013287 gttacgtctgcagcaatttaacctaaatttttcccgctcatttgctttattaggtttacaattatttaa 5013219  T

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Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 12896484 - 12896434
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccat 270  Q
    |||||| |||| |||||||||||||||||||||||| ||||||||||||||    
T  12896484 ccgctcatttgttttattaggtttgcaattatttaatctaataaattccat 12896434  T

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Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 272
Target Start/End: Original strand, 11735932 - 11736009
Alignment:
Q  195 tgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||       |||||| ||||||| || ||||||||||||||||||||||| ||||| |||||    
T  11735932 tgcagcaatttaacctaatattttcccgctcatttgcttcataaggtttgcaattatttaacctaacaaatttcatct 11736009  T

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Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 19640367 - 19640407
Alignment:
Q  232 tttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  19640367 tttattgggtttgcaattatttaacctaataaattccatct 19640407  T

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Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 19838960 - 19839000
Alignment:
Q  232 tttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  19838960 tttattgggtttgcaattatttaacctaataaattccatct 19839000  T

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Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 228 - 272
Target Start/End: Complemental strand, 28612707 - 28612663
Alignment:
Q  228 ttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||    
T  28612707 ttgctttattaggtttgcaattatttaacctaacaaatttcatct 28612663  T

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Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 272
Target Start/End: Original strand, 11736325 - 11736401
Alignment:
Q  196 gcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||||||||       |||||| ||||||| || ||||||||||||||||||||||| ||||| |||||    
T  11736325 gcagcaatttaacctaatattttcccgctcatttgcttcataaggtttgcaattatttaacctaacaaatttcatct 11736401  T

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Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 272
Target Start/End: Original strand, 12898044 - 12898123
Alignment:
Q  193 tctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||||||||| |       |||||| ||| |||| |||||||||||||||||||| |||| |||||||||||    
T  12898044 tctgcagcaatttaacctgatatttttccgctcatttactttgttaggtttgcaattatttaatctaacaaattccatct 12898123  T

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Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 265
Target Start/End: Original strand, 41326417 - 41326462
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaat 265  Q
    |||||| |||| ||||||| ||||||||||||||||||||||||||    
T  41326417 ccgctcatttgttttattaagtttgcaattatttaacctaataaat 41326462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 44543977 - 44543932
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||| |||||| ||||| |||||||||||||||||||||||||||    
T  44543977 tttgcattattaagtttgtaattatttaacctaataaattccatct 44543932  T

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Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 260
Target Start/End: Original strand, 627552 - 627625
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaa 260  Q
    ||||||| ||||||||||||||||||       |||||| ||| ||||||||  ||||||||||||||||||||    
T  627552 gttacgtttgcagcaatttaacctaattttttcccgctcatttactttattacatttgcaattatttaacctaa 627625  T

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Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 6348087 - 6348172
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||||||||||||| |||        |||||  ||||||||||||||||||||||||||||  ||| ||||| |||||    
T  6348087 gttacgtctgcagcaatttaacataattttttctcgctcaattgctttattaggtttgcaattatttaatttaacaaatttcatct 6348172  T

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Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 28612112 - 28612039
Alignment:
Q  187 gttacgtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaa 260  Q
    |||| ||||||| |||||||||||||       | |||| ||| ||||||||||||||||||||||||||||||    
T  28612112 gttaggtctgcaacaatttaacctaattttttccagctcattttctttattaggtttgcaattatttaacctaa 28612039  T

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Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 29550153 - 29550237
Alignment:
Q  192 gtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattag----gtttgcaattatttaacctaataaattccatct 272  Q
    ||||||| |||||||||||||       |||||| |||||||||||||    ||||||||||||||||||||| |||||| ||||    
T  29550153 gtctgcaacaatttaacctaatttttttccgctcatttgctttattagctaggtttgcaattatttaacctaacaaattcaatct 29550237  T

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Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 272
Target Start/End: Complemental strand, 37131572 - 37131494
Alignment:
Q  193 tctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||||||||||||||||       || ||| ||||||||||||| |||||||||||||||| ||| ||||| |||||    
T  37131572 tctgcagcaatttaacctaatttttttccactcatttgctttattag-tttgcaattatttaacttaacaaatttcatct 37131494  T

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Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 627635 - 627676
Alignment:
Q  231 ctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||| ||||||||||||||||||||| ||||| |||||    
T  627635 ctttattacgtttgcaattatttaacctaacaaatttcatct 627676  T

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Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 6347941 - 6347992
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| ||||||||||||| ||| |||||||||||||||| ||||| |||||    
T  6347941 ccgctcatttgctttattag-tttacaattatttaacctaacaaatttcatct 6347992  T

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Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 28612502 - 28612458
Alignment:
Q  222 gctcgtttgctttattaggtttgcaattatttaacctaataaatt 266  Q
    |||| ||| |||||||||||||||||||| ||||||||| |||||    
T  28612502 gctcattttctttattaggtttgcaattacttaacctaaaaaatt 28612458  T

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Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 29550013 - 29550053
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattc 267  Q
    ||||||||||||||||||  |||||||||||||| ||||||    
T  29550013 tttgctttattaggtttgttattatttaacctaacaaattc 29550053  T

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Target: scaffold0504 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 1584 - 1539
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  1584 tttgctttattaagtttgcaattatttaacctaataaattccatct 1539  T

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Target: scaffold0013 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 102751 - 102803
Alignment:
Q  220 ccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||| |||||||||||| ||||||||||||||||||||| |||||||||||    
T  102751 ccgctcatttgctttattaagtttgcaattatttaacctaacaaattccatct 102803  T

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Target: scaffold0240 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 13112 - 13192
Alignment:
Q  192 gtctgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||||| |||||||||||||       |||||| |||| |||||||||||||| |||||||||||||| |||||||||||    
T  13112 gtctgcaacaatttaacctaatttttttccgctcatttggtttattaggtttgccattatttaacctaacaaattccatct 13192  T

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Target: scaffold0240; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 13306 - 13351
Alignment:
Q  227 tttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    |||||||||||||| ||||||||||||||||||| ||||| |||||    
T  13306 tttgctttattagggttgcaattatttaacctaacaaatttcatct 13351  T

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Target: scaffold0294 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 12468 - 12403
Alignment:
Q  195 tgcagcaatttaacctaannnnnnnccgctcgtttgctttattaggtttgcaattatttaacctaa 260  Q
    ||||||||||||||||||       |||||| |||| |||||||||||||||||||||||||||||    
T  12468 tgcagcaatttaacctaatttttttccgctcatttgttttattaggtttgcaattatttaacctaa 12403  T

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Target: scaffold0320 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 14637 - 14586
Alignment:
Q  221 cgctcgtttgctttattaggtttgcaattatttaacctaataaattccatct 272  Q
    ||||| |||| |||||||| |||||||||||||||||||| |||||| ||||    
T  14637 cgctcatttgttttattagatttgcaattatttaacctaacaaattctatct 14586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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