View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10814_low_2 (Length: 273)
Name: NF10814_low_2
Description: NF10814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10814_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 16 - 268
Target Start/End: Complemental strand, 3932350 - 3932098
Alignment:
| Q |
16 |
caaacctaaaagaaacaatgatcatagaagttaaaggcaaatgggtgaaagcacacaaggcccaataaacaaaatttaacagaccagacataagttggcg |
115 |
Q |
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| T |
3932350 |
caaacctaaaagaaacaatgatcatcgaagttaaaggcaaatgggtgaaagcacacaaggcccgataaacaaaatttaacagaccagacataagttggcg |
3932251 |
T |
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| Q |
116 |
tcctgtatataacttcttctgttcatttttagttgtaactaagannnnnnnacacataccaagaaaatcaataaattatgttacttttgatagaactctt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3932250 |
tcctgtatataacttcttctgttcatttttagttgtaactaagatttttttacacataccaagaaaatcaataaattatgttacttttgatagaactctt |
3932151 |
T |
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| Q |
216 |
tttcgataatatcattaactatttatcatgccactccacctattcatctcact |
268 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3932150 |
ttttgataatatcattaactatttatcatgccactccacctatttatctcact |
3932098 |
T |
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