View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10815_2 (Length: 606)

Name: NF10815_2
Description: NF10815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10815_2
NF10815_2
[»] chr7 (3 HSPs)
chr7 (6-578)||(42923893-42924479)
chr7 (290-333)||(26604180-26604223)
chr7 (290-333)||(44552709-44552752)
[»] chr1 (3 HSPs)
chr1 (290-333)||(28442950-28442993)
chr1 (290-337)||(45688332-45688379)
chr1 (290-333)||(35577531-35577574)
[»] scaffold0041 (1 HSPs)
scaffold0041 (290-333)||(24372-24415)
[»] chr4 (4 HSPs)
chr4 (290-333)||(36498934-36498977)
chr4 (290-333)||(40450959-40451002)
chr4 (298-337)||(51718198-51718237)
chr4 (290-333)||(55523753-55523796)
[»] chr3 (5 HSPs)
chr3 (290-333)||(3860846-3860888)
chr3 (290-333)||(15042013-15042056)
chr3 (290-333)||(34086847-34086890)
chr3 (298-334)||(39688767-39688803)
chr3 (290-338)||(47064887-47064935)
[»] chr2 (2 HSPs)
chr2 (290-333)||(11573661-11573704)
chr2 (290-333)||(11712986-11713029)
[»] chr8 (1 HSPs)
chr8 (290-332)||(33220794-33220836)
[»] chr5 (1 HSPs)
chr5 (290-331)||(30489753-30489794)


Alignment Details
Target: chr7 (Bit Score: 479; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 6 - 578
Target Start/End: Complemental strand, 42924479 - 42923893
Alignment:
Q  6 agaagcaaaggaattagagaaaggcactaaggtctcatgtgagtaacactaagtgcatcagtcaacaacaggtgactaatttgagaaatttagtgtatat 105  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42924479 agaaacaaaggaattagagaaaggcactaaggtctcatgtgagtaacaccaagtgcatcagtcaacaacaggtgactaatttgagaaatttagtgtatat 42924380  T
Q  106 gatgatatgttcatttactatcatatgatttgaacatacctcaacatcatcaagccatgtcctacttagatcttatcttaattaaact------------ 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                
T  42924379 gatgatatgttcatttactatcatatgatttgaacatacctcaacatcatcaagccatgtcctacttagatcttatcttaattaaactcttataatcagg 42924280  T
Q  194 tttaataggatctaggtttggctaggagctacaaatttgattggataaaaattttggtcgagtgaaagtcaaccgctatctaagtcgtcactcttataac 293  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42924279 tttaataggatctaggtttggctaggagctacaaatttgactggataaaaattttggtcgagtgaaagtcaaccgctatctaagtcgtcactcttataac 42924180  T
Q  294 atacgtaggggcattttcaacttttactttgagaatgagcagaattctaaatcgtctcctct--atttatagacattgtgcacaagacccaaatcccatt 391  Q
    |||||||||||||||||||| ||||| |||| ||||||||||||||||||   ||| || ||  || |||||||||||||||||||||||||||||||||    
T  42924179 atacgtaggggcattttcaatttttattttgggaatgagcagaattctaagcggtcgcccctgtatctatagacattgtgcacaagacccaaatcccatt 42924080  T
Q  392 agaacttggtgggccagctagggcccatatacacaacttggaatatccttgaacatggggaccagttggattgaaaagaccccaagcgtccgagtcatgc 491  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  42924079 agaacttggtgggccagctagggcccatatacacaacttggaatatccttgaacatgggggccagttggatagaaaagaccccaagcgtccgagtcatgc 42923980  T
Q  492 ccctggctatgcctagctagacaatcttgattaatgattaattatatcactcttcactacaattcaaacaacatacatcacataaat 578  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42923979 ccctggctatgcctagctagacaatcttgattaatgattaattatatcactcttcactacaattcaaacaacatacatcacataaat 42923893  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 290 - 333
Target Start/End: Original strand, 26604180 - 26604223
Alignment:
Q  290 taacatacgtaggggcattttcaacttttactttgagaatgagc 333  Q
    |||||| |||||||||||||| ||||||||||||||||||||||    
T  26604180 taacatgcgtaggggcattttaaacttttactttgagaatgagc 26604223  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 333
Target Start/End: Original strand, 44552709 - 44552752
Alignment:
Q  290 taacatacgtaggggcattttcaacttttactttgagaatgagc 333  Q
    |||||| |||||| |||||||| |||||||||||||||||||||    
T  44552709 taacatgcgtaggagcattttcgacttttactttgagaatgagc 44552752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 290 - 333
Target Start/End: Complemental strand, 28442993 - 28442950
Alignment:
Q  290 taacatacgtaggggcattttcaacttttactttgagaatgagc 333  Q
    |||||| |||||||||||||||||||||||||||| ||||||||    
T  28442993 taacatgcgtaggggcattttcaacttttactttgggaatgagc 28442950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 290 - 337
Target Start/End: Complemental strand, 45688379 - 45688332
Alignment:
Q  290 taacatacgtaggggcattttcaacttttactttgagaatgagcagaa 337  Q
    |||||| |||||||||||||| ||||||||||||| ||||||||||||    
T  45688379 taacatgcgtaggggcattttgaacttttactttgggaatgagcagaa 45688332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 333
Target Start/End: Original strand, 35577531 - 35577574
Alignment:
Q  290 taacatacgtaggggcattttcaacttttactttgagaatgagc 333  Q
    ||||||| |||||||||||||| |||||||||||| ||||||||    
T  35577531 taacatatgtaggggcattttcgacttttactttgggaatgagc 35577574  T

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Target: scaffold0041 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 333
Target Start/End: Original strand, 24372 - 24415
Alignment:
Q  290 taacatacgtaggggcattttcaacttttactttgagaatgagc 333  Q
    |||||| |||||||||||||| ||||||||||||| ||||||||    
T  24372 taacatgcgtaggggcattttaaacttttactttgggaatgagc 24415  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 333
Target Start/End: Complemental strand, 36498977 - 36498934
Alignment:
Q  290 taacatacgtaggggcattttcaacttttactttgagaatgagc 333  Q
    |||||| | |||||||||||||||||||||||||| ||||||||    
T  36498977 taacatgcataggggcattttcaacttttactttgggaatgagc 36498934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 333
Target Start/End: Complemental strand, 40451002 - 40450959
Alignment:
Q  290 taacatacgtaggggcattttcaacttttactttgagaatgagc 333  Q
    |||||| ||||||||||||||| |||||||||||| ||||||||    
T  40451002 taacatgcgtaggggcattttcgacttttactttgggaatgagc 40450959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 337
Target Start/End: Complemental strand, 51718237 - 51718198
Alignment:
Q  298 gtaggggcattttcaacttttactttgagaatgagcagaa 337  Q
    |||||||||||||| |||||||||||| ||||||||||||    
T  51718237 gtaggggcattttcgacttttactttgggaatgagcagaa 51718198  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 333
Target Start/End: Complemental strand, 55523796 - 55523753
Alignment:
Q  290 taacatacgtaggggcattttcaacttttactttgagaatgagc 333  Q
    |||||| ||||||||||||||| ||||||||||||| |||||||    
T  55523796 taacatgcgtaggggcattttcgacttttactttgaaaatgagc 55523753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 333
Target Start/End: Original strand, 3860846 - 3860888
Alignment:
Q  290 taacatacgtaggggcattttcaacttttactttgagaatgagc 333  Q
    |||||||||||||| | |||||||||||||||||||||||||||    
T  3860846 taacatacgtaggg-cgttttcaacttttactttgagaatgagc 3860888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 333
Target Start/End: Original strand, 15042013 - 15042056
Alignment:
Q  290 taacatacgtaggggcattttcaacttttactttgagaatgagc 333  Q
    |||||| ||||||||||||||| |||||||||||| ||||||||    
T  15042013 taacatgcgtaggggcattttcgacttttactttgggaatgagc 15042056  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 333
Target Start/End: Original strand, 34086847 - 34086890
Alignment:
Q  290 taacatacgtaggggcattttcaacttttactttgagaatgagc 333  Q
    |||||| ||||||||||||||| |||||||||||| ||||||||    
T  34086847 taacatgcgtaggggcattttcgacttttactttgggaatgagc 34086890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 298 - 334
Target Start/End: Original strand, 39688767 - 39688803
Alignment:
Q  298 gtaggggcattttcaacttttactttgagaatgagca 334  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  39688767 gtaggggtattttcgacttttactttgagaatgagca 39688803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 338
Target Start/End: Complemental strand, 47064935 - 47064887
Alignment:
Q  290 taacatacgtaggggcattttcaacttttactttgagaatgagcagaat 338  Q
    |||||| |||||| |||||||  |||||||||||| |||||||||||||    
T  47064935 taacatgcgtaggagcattttggacttttactttgggaatgagcagaat 47064887  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 333
Target Start/End: Complemental strand, 11573704 - 11573661
Alignment:
Q  290 taacatacgtaggggcattttcaacttttactttgagaatgagc 333  Q
    |||||||||||||||||||||  |||||||||||| ||||||||    
T  11573704 taacatacgtaggggcatttttgacttttactttgggaatgagc 11573661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 333
Target Start/End: Complemental strand, 11713029 - 11712986
Alignment:
Q  290 taacatacgtaggggcattttcaacttttactttgagaatgagc 333  Q
    |||||||||||||||||||||  |||||||||||| ||||||||    
T  11713029 taacatacgtaggggcattttggacttttactttgggaatgagc 11712986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 332
Target Start/End: Original strand, 33220794 - 33220836
Alignment:
Q  290 taacatacgtaggggcattttcaacttttactttgagaatgag 332  Q
    |||||| |||||||||||||| ||||||||||||| |||||||    
T  33220794 taacatgcgtaggggcattttgaacttttactttgggaatgag 33220836  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 30489794 - 30489753
Alignment:
Q  290 taacatacgtaggggcattttcaacttttactttgagaatga 331  Q
    |||||| ||||||||||||||| |||||||||||| ||||||    
T  30489794 taacatgcgtaggggcattttcgacttttactttgggaatga 30489753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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