View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10815_3 (Length: 581)
Name: NF10815_3
Description: NF10815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10815_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 150; Significance: 5e-79; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 19602758 - 19602589
Alignment:
| Q |
1 |
ggaaacactgcacgaatacagtattatataacagaggaatttatagatataataagaatcaatgaatcatgatatggtccatatgaatcgggtttaaaaa |
100 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
19602758 |
ggaaacactgcatgaatacattattatataacagaggaatttatagatataataagaatcaatgaatcataatatggtccatatgagtcgggtttaaaaa |
19602659 |
T |
|
| Q |
101 |
tagtgtgaatttaatactttattctttgaaataaatatagtttccgttgtttatgtattttttgccagcc |
170 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19602658 |
tagtgtgaatttaatacttttttctttgaaataaatatagtttccgttgtttatgtattttttgccagcc |
19602589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 185 - 407
Target Start/End: Complemental strand, 19602535 - 19602337
Alignment:
| Q |
185 |
aacatgtaacggcataaatttatcatgtttgtcggtttaattctttttggatagaacgcccgtttaagaattactcctatataattctcaacttctaatt |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
19602535 |
aacatgtaacggcataaatttatcatgtttgtcggtttaattctttttggatagaacgcccgtttaaaaattactc----------ctcaacttctaa-- |
19602448 |
T |
|
| Q |
285 |
cttcaacttctaatttcattatttacttttg-ttttatatatgctttccattggaggcggggtatacgttacaaaggacatatgaaaagcagaatgaatg |
383 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19602447 |
-------------tttcattatttacttttgtttttatatatgccttccattggaggcggggtatacgttacaaaggacatatgaaaagcagaatgaatg |
19602361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 423 - 564
Target Start/End: Complemental strand, 19602235 - 19602096
Alignment:
| Q |
423 |
acttgacctcatgtcgtacaatgtgaatcatctatatatatatgatctcttaactgcccttagcatatctcgtcggatatctcggagttagttattccaa |
522 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19602235 |
acttgacctcatgtcgtacaatgtaaatcatccatatatat--gatctcttaactgcccttagcatatctcgtcggatatctcggagttagttatgccaa |
19602138 |
T |
|
| Q |
523 |
ggacagttaagagatcataatagacacccatatattatactc |
564 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
19602137 |
gggcagttaagagatcataatagacactcatatattatactc |
19602096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University