View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10815_4 (Length: 536)
Name: NF10815_4
Description: NF10815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10815_4 |
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Alignment Details
Target: chr1 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 24 - 529
Target Start/End: Complemental strand, 35046331 - 35045826
Alignment:
| Q |
24 |
gttttatcaatgtgattgcgatagcattgctttgtaaaacacatttgtgtttaccatttgcggtttattttacagaatgacctgatccatgcatggggac |
123 |
Q |
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| T |
35046331 |
gttttatcaatgtgattgtgatagcattgctttgtaaaacacatttgtgtttaccacttgcggtttattttacagaatgacctgatccatgcatggggac |
35046232 |
T |
|
| Q |
124 |
tagatatgcagcttggctactgctcccaggcaagttatgtatatcgatttcatcatttcacaaaattttgaactaatcacttgttctacgatatgctatt |
223 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35046231 |
tagatatgcagcttggctactgctctcaggcaagttatgtatatcgatttcattatttcacaaaattttgaactaatcacttgttctaccatatgctatt |
35046132 |
T |
|
| Q |
224 |
tcaattttgtgaaacagaatttcaacaaactgctattgtttgcgatccatgattgacaaaacttctgaccttgtttatgtacgatcaatagggcgatcga |
323 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35046131 |
tcaattttgtgaaacagaatttcaacaaactgctattttttgcaatccatgattgaaaaaacttctgaccttgtttatgtacgatcaatagggtgatcga |
35046032 |
T |
|
| Q |
324 |
acaaaaaatgttggtgttgttgatgccgagtacattgtccactacaatcgtcccactctcggaggcacagatgacaagactacagtaaaaaatgtagtat |
423 |
Q |
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| T |
35046031 |
acaaaaaatgttggtgttgttgatgccgagtacattgtccactacaatcgtcccactcttggaggcacagatgacaagactacagtaaaaaatgtagtat |
35045932 |
T |
|
| Q |
424 |
ctttgactttaactttgcagaaatgcttaagttttcataagattaaaatttcacaaactgagacttataaactgttacttgcattgcaggtttcagattc |
523 |
Q |
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| T |
35045931 |
ctttgactttaactttgcagaaatgcttaagttttcataagattaaaatttcacaaactgagacttataaactgttacttgcattgcaggtttcagattc |
35045832 |
T |
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| Q |
524 |
atctca |
529 |
Q |
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|||||| |
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| T |
35045831 |
atctca |
35045826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 38596808 - 38596852
Alignment:
| Q |
238 |
cagaatttcaacaaactgctattgtttgcgatccatgattgacaa |
282 |
Q |
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|||||||| |||||||||||||| |||||| |||||||||||||| |
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| T |
38596808 |
cagaatttgaacaaactgctattttttgcggtccatgattgacaa |
38596852 |
T |
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