View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10815_5 (Length: 523)
Name: NF10815_5
Description: NF10815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10815_5 |
 | |
|
| [»] scaffold0891 (2 HSPs) |
| |
|
| [»] scaffold2086 (1 HSPs) |
| | |
|
| [»] scaffold1996 (2 HSPs) |
| | |
|
| [»] scaffold1335 (1 HSPs) |
| | |
|
| [»] scaffold0654 (1 HSPs) |
| | |
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Alignment Details
Target: scaffold0891 (Bit Score: 507; Significance: 0; HSPs: 2)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Original strand, 3481 - 4003
Alignment:
| Q |
1 |
atttcttatggtgtgcctactatttgttggcctttctttgctgaacaacaaacaaattgtaggtatttatgcaagtcttggaaaatagggatggaaatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3481 |
atttcttatggtgtgcctactatttgttggcctttctttgctgaacaacaaacaaattgtaggtatttatgcaagtcttggaaaatagggatggaaatta |
3580 |
T |
|
| Q |
101 |
accatgatgttaaaagggatgatataactgaaattgtaatcgaaatgatgaaacgagaaaagggaaaagaaatgagacacaagtgcttggaatggaagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3581 |
accatgatgttaaaagggatgatataactgaaattgtaatggaaatgatgaaacgagaaaagggaaaagaaatgagacacaagtgcttggaatggaagaa |
3680 |
T |
|
| Q |
201 |
gaaagctgcatacactactgatttgggaggatattcatacaataattttcataagttgattagagatgttcttcatcaaaatgctatttgagttccaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3681 |
gaaagctgcatacactactgatttgggaggatattcatacaataattttcataagttgattagagatgttcttcatcaaaatgctatttgagttccaaat |
3780 |
T |
|
| Q |
301 |
attagtctaatatgaattatattttggtttagttgtaatacttatattctattacctgtctactttaaccaaacagttgaactcaaatagttaataagct |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3781 |
attagtctaatatgaattatattttggtttagttgtaatacttatattctattacctatctactttgaccaaacagttgaactcaaatagttaataagct |
3880 |
T |
|
| Q |
401 |
tcaccaaatgacaaatcgtttgggagaatcagaattcaattcttggatggaacaattgttggtaaaactatacttatctcacaaccaaactctagattat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3881 |
tcaccaaatgacaaatcgtttgggagaaccagaattcaattcttggatggaacaattgttggtaaaactatacttatctcacaaccaaactctagattat |
3980 |
T |
|
| Q |
501 |
cagaggaaagagctaagagaact |
523 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
3981 |
cagaggaaagagctaagagaact |
4003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 4011 - 4075
Alignment:
| Q |
142 |
gaaatgatgaaacgagaaaagggaaaagaaatgagacacaagtgcttggaatggaagaagaaagct |
207 |
Q |
| |
|
||||||||| || ||||||||| | ||||| ||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
4011 |
gaaatgatggaaggagaaaaggaagaagaattgagaca-aagtgcttggagtggaagaagaaagct |
4075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 181; Significance: 1e-97; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 35774610 - 35774310
Alignment:
| Q |
1 |
atttcttatggtgtgcctactatttgttggcctttctttgctgaacaacaaacaaattgtaggtatttatgcaagtcttggaaaatagggatggaaatta |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35774610 |
atttcctatggtgtgcctactatttgttggcctttctttgctgagcaacaaacaaattgttggtatttatgcaagtcttggaaaatagggatggaaatta |
35774511 |
T |
|
| Q |
101 |
accatgatgttaaaagggatgatataactgaaattgtaatcgaaatgatgaaacgagaaaagggaaaagaaatgagacacaagtgcttggaatggaagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||| | |||||||| || ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35774510 |
accatgatgttaaaagggatgatataacagaacttgttgtgcaaatgatggaaggagaaaagggaaaagaaatgagacacaagtgcttggagtggaagaa |
35774411 |
T |
|
| Q |
201 |
gaaagctgcatacactactgatttgggaggatattcatacaataattttcataagttgattagagatgttcttcatcaaaatgctatttgagttccaaat |
300 |
Q |
| |
|
||||||| | | ||||| ||||||| |||| |||||||||||||| || ||||| || | ||| ||||||||||| || ||||||||||| |||||| |
|
|
| T |
35774410 |
gaaagctagaaaagctactaatttgggtggatcatcatacaataatttccagaagttaatcaaagaggttcttcatcataaagctatttgagtcccaaat |
35774311 |
T |
|
| Q |
301 |
a |
301 |
Q |
| |
|
| |
|
|
| T |
35774310 |
a |
35774310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 35848391 - 35848097
Alignment:
| Q |
1 |
atttcttatggtgtgcctactatttgttggcctttctttgctgaacaacaaacaaattgtaggtatttatgcaagtcttggaaaatagggatggaaatta |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
35848391 |
atttcctatggtgtgcctactatttgttggcctttctttgttgagcaacaaacaaattgtaggtatttatgcaacacttggaaaattgggatggaaatta |
35848292 |
T |
|
| Q |
101 |
accatgatgttaaaagggatgatataactgaaattgtaatcgaaatgatgaaacgagaaaagggaaaagaaatgagacacaagtgcttggaatggaagaa |
200 |
Q |
| |
|
|| ||||||| ||||| || || |||| |||| |||| || ||||||||| || ||||||| ||||||||||||||||| ||| | |||| |||||||| |
|
|
| T |
35848291 |
actatgatgtgaaaagtgaagagataattgaacttgtgatggaaatgatggaaggagaaaaaggaaaagaaatgagacaaaagagtttggtgtggaagaa |
35848192 |
T |
|
| Q |
201 |
gaaagctgcatacactactgatttgggaggatattcatacaataattttcataagttgattagagatgttcttcatcaaaatgctatttgagttc |
295 |
Q |
| |
|
||||||| || | ||||| |||||||||||| |||||||||||||| |||||||| || | ||| ||||||||||| || || |||||||||| |
|
|
| T |
35848191 |
gaaagctacagatgctactaatttgggaggatcatcatacaataatttccataagttaatcaaagaggttcttcatcacaaggccatttgagttc |
35848097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 35866062 - 35865769
Alignment:
| Q |
1 |
atttcttatggtgtgcctactatttgttggcctttctttgctgaacaacaaacaaattgtaggtatttatgcaagtcttggaaaatagggatggaaatta |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35866062 |
atttcctatggtgtgcctactatttgttggcctttctttgctgagcaacaaacaaattgtaggtatttatgcaacacttggaaaatagggatggaaatta |
35865963 |
T |
|
| Q |
101 |
accatgatgttaaaagggatgatataactgaaattgtaatcgaaatgatgaaacgagaaaagggaaaagaaatgagacacaagtgcttggaatggaagaa |
200 |
Q |
| |
|
|| ||||||| ||||| || || |||| ||| |||| || ||||||||| || ||||||| ||||||||||||||||| ||| | |||| |||||||| |
|
|
| T |
35865962 |
actatgatgtgaaaagagaagagataagagaacttgtgatggaaatgatggaaggagaaaaaggaaaagaaatgagacaaaagagtttggtgtggaagaa |
35865863 |
T |
|
| Q |
201 |
gaaagctgcatacactactgatttgggaggatattcatacaataattttcataagttgattagagatgttcttcatcaaaatgctatttgagtt |
294 |
Q |
| |
|
||||||| || | ||||| |||||||||||| ||||||| |||||| |||| || |||| ||| |||||||||| ||||||||||||||| |
|
|
| T |
35865862 |
gaaagctacagatgctactaatttgggaggatcatcatacattaatttctataatttaattaaagagcttcttcatcacaatgctatttgagtt |
35865769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 35754487 - 35754195
Alignment:
| Q |
1 |
atttcttatggtgtgcctactatttgttggcctttctttgctgaacaacaaacaaattgtaggtatttatgcaagtcttggaaaatagggatggaaatta |
100 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||| | |||||||||| | |||||||| |||| |||||||||| |
|
|
| T |
35754487 |
atttcttcaggtgttcctactatttgttggcccttctttgctgagcaacaaacaaattgcaagtatttatgcgacacttggaaagtaggaatggaaatta |
35754388 |
T |
|
| Q |
101 |
accatgatgttaaaagggatgatataactgaaattgtaatcgaaatgatgaaacgagaaaagggaaaagaaatgagacacaagtgcttggaatggaagaa |
200 |
Q |
| |
|
|| ||||||| |||||||| || ||||| ||| ||||| | |||||||||||| |||||||||||||| |||||| ||| ||| || | || |||||||| |
|
|
| T |
35754387 |
acaatgatgtaaaaagggaagagataacagaacttgtactggaaatgatgaaaggagaaaagggaaaacaaatgaaacaaaagagcatagagtggaagaa |
35754288 |
T |
|
| Q |
201 |
gaaagctgcatacactactgatttgggaggatattcatacaataattttcataagttgattagagatgttcttcatcaaaatgctatttgagt |
293 |
Q |
| |
|
||||||| | | ||| |||||| ||||||| ||||||| |||||| |||||||| |||| ||| ||||||| ||| |||||| ||||||| |
|
|
| T |
35754287 |
gaaagctaaaaaggctaatgattttggaggatcatcatacactaatttccataagttaattacagaggttcttcgtcacaatgctttttgagt |
35754195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 137
Target Start/End: Complemental strand, 35735623 - 35735512
Alignment:
| Q |
26 |
gttggcctttctttgctgaacaacaaacaaattgtaggtatttatgcaagtcttggaaaatagggatggaaattaaccatgatgttaaaagggatgatat |
125 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| || ||| ||||| ||||||||||| ||||| ||||||| ||||| || || | |
|
|
| T |
35735623 |
gttggcctttctttgctgagcaacaaacaaattgtaggtatataagcacaacttgggggatagggatggatattaaggatgatgtgaaaagagaagaggt |
35735524 |
T |
|
| Q |
126 |
aactgaaattgt |
137 |
Q |
| |
|
||||||| |||| |
|
|
| T |
35735523 |
aactgaacttgt |
35735512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 403 - 479
Target Start/End: Complemental strand, 40950954 - 40950878
Alignment:
| Q |
403 |
accaaatgacaaatcgtttgggagaa-tcagaattcaattcttggatggaacaattgttggtaaaactatacttatct |
479 |
Q |
| |
|
|||||||||||||||||||| |||| ||| ||||||||| ||||||| ||||||||||||| | |||||| |||||| |
|
|
| T |
40950954 |
accaaatgacaaatcgtttgaaagaactca-aattcaatttttggatgaaacaattgttggtcagactatatttatct |
40950878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 430
Target Start/End: Complemental strand, 35220729 - 35220689
Alignment:
| Q |
390 |
gttaataagcttcaccaaatgacaaatcgtttgggagaatc |
430 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
35220729 |
gttaataagcttcaccaaatgacgaatcgtttgggataatc |
35220689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 4 - 282
Target Start/End: Original strand, 347 - 625
Alignment:
| Q |
4 |
tcttatggtgtgcctactatttgttggcctttctttgctgaacaacaaacaaattgtaggtatttatgcaagtcttggaaaatagggatggaaattaacc |
103 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
347 |
tcttctggtatgcctactatttgttggcctttctttgctgagcaacaaacaaattgtaggtatttatgcaacacttggaaaatagggatggaaattaacc |
446 |
T |
|
| Q |
104 |
atgatgttaaaagggatgatataactgaaattgtaatcgaaatgatgaaacgagaaaagggaaaagaaatgagacacaagtgcttggaatggaagaagaa |
203 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| || ||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
447 |
atgatgttaaaagggatgatataaaagaaattgtgatggaaatgatggaaggagaaaagggaaaagaaatgagacataagtgcttggaatggaagaagaa |
546 |
T |
|
| Q |
204 |
agctgcatacactactgatttgggaggatattcatacaataattttcataagttgattagagatgttcttcatcaaaat |
282 |
Q |
| |
|
|||| || | |||||||||||||||||| || |||||||||||||||||||| | | ||| ||||||||| ||||| |
|
|
| T |
547 |
agctacagaagctactgatttgggaggattgtcctacaataattttcataagttagtcaaagaggttcttcatgaaaat |
625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 4 - 282
Target Start/End: Original strand, 347 - 625
Alignment:
| Q |
4 |
tcttatggtgtgcctactatttgttggcctttctttgctgaacaacaaacaaattgtaggtatttatgcaagtcttggaaaatagggatggaaattaacc |
103 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
347 |
tcttctggtatgcctactatttgttggcctttctttgctgagcaacaaacaaattgtaggtatttatgcaacacttggaaaatagggatggaaattaacc |
446 |
T |
|
| Q |
104 |
atgatgttaaaagggatgatataactgaaattgtaatcgaaatgatgaaacgagaaaagggaaaagaaatgagacacaagtgcttggaatggaagaagaa |
203 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| || ||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
447 |
atgatgttaaaagggatgatataaaagaaattgtgatggaaatgatggaaggagaaaagggaaaagaaatgagacataagtgcttggaatggaagaagaa |
546 |
T |
|
| Q |
204 |
agctgcatacactactgatttgggaggatattcatacaataattttcataagttgattagagatgttcttcatcaaaat |
282 |
Q |
| |
|
|||| || | |||||||||||||||||| || |||||||||||||||||||| | | ||| ||||||||| ||||| |
|
|
| T |
547 |
agctacagaagctactgatttgggaggattgtcctacaataattttcataagttagtcaaagaggttcttcatgaaaat |
625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 47 - 137
Target Start/End: Original strand, 1083 - 1173
Alignment:
| Q |
47 |
aacaaacaaattgtaggtatttatgcaagtcttggaaaatagggatggaaattaaccatgatgttaaaagggatgatataactgaaattgt |
137 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||| || ||||| ||| |||| |
|
|
| T |
1083 |
aacaaacaaattgtaggtatttatgcaacacttggaaaattgggatggaaattaaccatgatgtgaaaagggaagagataaccgaacttgt |
1173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 142 - 295
Target Start/End: Original strand, 13 - 166
Alignment:
| Q |
142 |
gaaatgatgaaacgagaaaagggaaaagaaatgagacacaagtgcttggaatggaagaagaaagctgcatacactactgatttgggaggatattcataca |
241 |
Q |
| |
|
||||||||| || ||||||| ||||||||||||||||| ||| | |||| ||||||||||||||| || | ||||| |||||||||||| ||||||| |
|
|
| T |
13 |
gaaatgatggaaggagaaaaaggaaaagaaatgagacaaaagagtttggtgtggaagaagaaagctacagatgctactaatttgggaggatcatcataca |
112 |
T |
|
| Q |
242 |
ataattttcataagttgattagagatgttcttcatcaaaatgctatttgagttc |
295 |
Q |
| |
|
||||||| |||||||| || | ||| ||||||||||| || || |||||||||| |
|
|
| T |
113 |
ataatttccataagttaatcaaagaggttcttcatcacaaggccatttgagttc |
166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 406 - 479
Target Start/End: Original strand, 40930673 - 40930746
Alignment:
| Q |
406 |
aaatgacaaatcgtttgggagaatcagaattcaattcttggatggaacaattgttggtaaaactatacttatct |
479 |
Q |
| |
|
||||||| ||||||||| ||||||| ||||| ||||||||||| ||||||| || || ||||||||||||||| |
|
|
| T |
40930673 |
aaatgacgaatcgtttgagagaatccgaatttgattcttggatgaaacaattatttgtcaaactatacttatct |
40930746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 500
Target Start/End: Original strand, 38360850 - 38360918
Alignment:
| Q |
432 |
gaattcaattcttggatggaacaattgttggtaaaactatacttatctcacaaccaaactctagattat |
500 |
Q |
| |
|
||||||||||||| ||||||| |||| |||| ||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
38360850 |
gaattcaattcttagatggaataattcttggaccaactatacttacctcacaatcaaactctagattat |
38360918 |
T |
|
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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 403
Target Start/End: Complemental strand, 39818701 - 39818662
Alignment:
| Q |
364 |
tttaaccaaacagttgaactcaaatagttaataagcttca |
403 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
39818701 |
tttaaccaagcaattgaactcaaatagttaataagcttca |
39818662 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 37399227 - 37399191
Alignment:
| Q |
24 |
ttgttggcctttctttgctgaacaacaaacaaattgt |
60 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
37399227 |
ttgttggcctttttttgctgaacaacaaactaattgt |
37399191 |
T |
|
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Target: scaffold0654 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0654
Description:
Target: scaffold0654; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 428
Target Start/End: Complemental strand, 3656 - 3618
Alignment:
| Q |
390 |
gttaataagcttcaccaaatgacaaatcgtttgggagaa |
428 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
3656 |
gttaatgagctttaccaaatgacaaatcgtttgggagaa |
3618 |
T |
|
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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 366 - 412
Target Start/End: Original strand, 29453220 - 29453266
Alignment:
| Q |
366 |
taaccaaacagttgaactcaaatagttaataagcttcaccaaatgac |
412 |
Q |
| |
|
|||||||||| |||| |||||||||||||| | |||||||||||||| |
|
|
| T |
29453220 |
taaccaaacaattgagctcaaatagttaatgaacttcaccaaatgac |
29453266 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 26672139 - 26672102
Alignment:
| Q |
25 |
tgttggcctttctttgctgaacaacaaacaaattgtag |
62 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
26672139 |
tgttggcctttttttgctgaacaacaaactaattgtag |
26672102 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 26901425 - 26901388
Alignment:
| Q |
25 |
tgttggcctttctttgctgaacaacaaacaaattgtag |
62 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
26901425 |
tgttggcctttttttgctgaacaacaaactaattgtag |
26901388 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 26943737 - 26943700
Alignment:
| Q |
25 |
tgttggcctttctttgctgaacaacaaacaaattgtag |
62 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
26943737 |
tgttggcctttttttgctgaacaacaaactaattgtag |
26943700 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 441
Target Start/End: Original strand, 118773 - 118833
Alignment:
| Q |
381 |
actcaaatagttaataagcttcaccaaatgacaaatcgtttgggagaatcagaattcaatt |
441 |
Q |
| |
|
|||||||| ||||| |||| ||||||| ||| |||||||||||||||| |||||||||| |
|
|
| T |
118773 |
actcaaatggttaacgagctccaccaaagaacatatcgtttgggagaatctgaattcaatt |
118833 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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