View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10815_8 (Length: 381)

Name: NF10815_8
Description: NF10815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10815_8
NF10815_8
[»] chr5 (6 HSPs)
chr5 (17-206)||(24107457-24107647)
chr5 (272-365)||(24107713-24107806)
chr5 (82-160)||(3241963-3242041)
chr5 (83-159)||(25017302-25017378)
chr5 (106-160)||(10851273-10851327)
chr5 (82-138)||(39069308-39069364)
[»] chr4 (7 HSPs)
chr4 (82-161)||(35675199-35675278)
chr4 (98-164)||(31494667-31494734)
chr4 (93-159)||(33951731-33951798)
chr4 (85-159)||(34016649-34016723)
chr4 (106-148)||(40593646-40593688)
chr4 (82-159)||(26040371-26040448)
chr4 (112-161)||(52895775-52895824)
[»] chr2 (3 HSPs)
chr2 (82-161)||(34220655-34220734)
chr2 (82-161)||(11659283-11659362)
chr2 (305-353)||(34681609-34681657)
[»] chr3 (8 HSPs)
chr3 (82-161)||(18796-18875)
chr3 (98-161)||(13647045-13647109)
chr3 (82-161)||(26850503-26850582)
chr3 (82-161)||(49976150-49976229)
chr3 (82-152)||(18946-19016)
chr3 (99-164)||(46160549-46160615)
chr3 (82-159)||(51817323-51817400)
chr3 (82-150)||(34060786-34060854)
[»] chr8 (4 HSPs)
chr8 (91-161)||(7532815-7532885)
chr8 (83-159)||(19389321-19389397)
chr8 (86-161)||(11332803-11332878)
chr8 (93-160)||(6841706-6841774)
[»] chr1 (11 HSPs)
chr1 (106-161)||(41492954-41493008)
chr1 (82-161)||(40920206-40920287)
chr1 (86-161)||(43168166-43168241)
chr1 (86-161)||(44359678-44359753)
chr1 (82-152)||(22346252-22346322)
chr1 (85-159)||(34874591-34874665)
chr1 (98-164)||(48938672-48938738)
chr1 (98-159)||(49901962-49902024)
chr1 (82-151)||(50295449-50295518)
chr1 (91-147)||(894960-895016)
chr1 (305-357)||(49060944-49060996)
[»] chr7 (4 HSPs)
chr7 (82-164)||(42222242-42222324)
chr7 (82-153)||(43958100-43958171)
chr7 (106-164)||(31360298-31360356)
chr7 (82-134)||(48879691-48879743)
[»] chr6 (4 HSPs)
chr6 (82-160)||(27127517-27127595)
chr6 (82-161)||(28014656-28014735)
chr6 (85-159)||(12191517-12191591)
chr6 (83-152)||(12402842-12402911)


Alignment Details
Target: chr5 (Bit Score: 163; Significance: 6e-87; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 24107457 - 24107647
Alignment:
Q  17 aatattgtttatatctataactatacataacag-ttatgctaacaagtgattttaagaaaacgaaaaatattttcacttttaaaaaagttaattcatcac 115  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||    
T  24107457 aatattgtttatatctataactatacataacaggttatgctaacaagtgattttaagaaaacgaaattttttttcacttttaaaaaagttaattcatcac 24107556  T
Q  116 ttttcacaacttcccaatacaatatctctatttttatcctcttaactaaaatcttaaaatactttttagtattttccataaataaaataaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  24107557 ttttcacaacttcccaatacaatatctctatttttatcctcttaactaaaatcttaaaatactttttagcattttccataaagaaaataaa 24107647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 272 - 365
Target Start/End: Original strand, 24107713 - 24107806
Alignment:
Q  272 aaattgtttaaattgttaaatgattatgatactgagatttcatgtgtgagtaaagtacattttttctaatgaatagttggtccaaatggtgtga 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24107713 aaattgtttaaattgttaaatgattatgatactgagatttcatgtgtgagtaaagtacattttttctaatgaatagttggtccaaattgtgtga 24107806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 160
Target Start/End: Complemental strand, 3242041 - 3241963
Alignment:
Q  82 aatattttcacttttaaaaaagttaattcatcacttttcacaacttcccaatacaatatctctatttttatcctcttaa 160  Q
    |||||||| |||||||||||  ||||||||||| ||||||| |||||||||| |||||| | |||||||||| ||||||    
T  3242041 aatattttaacttttaaaaagtttaattcatcaattttcactacttcccaatgcaatatttttatttttatcgtcttaa 3241963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 25017378 - 25017302
Alignment:
Q  83 atattttcacttttaaaaaagttaattcatcacttttcacaacttcccaatacaatatctctatttttatcctctta 159  Q
    ||||||| |||||||||||  | |||| |||||||||||||| || ||||||| |||| ||||||||||||| ||||    
T  25017378 atattttgacttttaaaaagttaaatttatcacttttcacaattttccaatactatatttctatttttatcccctta 25017302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 10851273 - 10851327
Alignment:
Q  106 aattcatcacttttcacaacttcccaatacaatatctctatttttatcctcttaa 160  Q
    ||||||||||||||  | |||||||||| |||||| | |||||||||||||||||    
T  10851273 aattcatcacttttttccacttcccaatgcaatatttatatttttatcctcttaa 10851327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 39069364 - 39069308
Alignment:
Q  82 aatattttcacttttaaaaaagttaattcatcacttttcacaacttcccaatacaat 138  Q
    |||||||| ||||||||||   | ||||||||||||||||||| || ||||||||||    
T  39069364 aatattttgacttttaaaatgttaaattcatcacttttcacaattttccaatacaat 39069308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 35675278 - 35675199
Alignment:
Q  82 aatattttcacttttaaaaaagttaattcatcacttttcacaacttcccaatacaatatctctatttttatcctcttaac 161  Q
    |||||||| |||||||||||  | ||||||||||||||||| | ||||||||||||||| |||||||||||| |||||||    
T  35675278 aatattttaacttttaaaaagttaaattcatcacttttcactatttcccaatacaatatttctatttttatcgtcttaac 35675199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 164
Target Start/End: Complemental strand, 31494734 - 31494667
Alignment:
Q  98 aaaaagttaa-ttcatcacttttcacaacttcccaatacaatatctctatttttatcctcttaactaa 164  Q
    |||||||||| ||| ||||||||||| | |||| |||||||| | |||||||||||| ||||||||||    
T  31494734 aaaaagttaaattcttcacttttcaccatttccaaatacaatgtttctatttttatcatcttaactaa 31494667  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 33951731 - 33951798
Alignment:
Q  93 ttttaaaaaagttaa-ttcatcacttttcacaacttcccaatacaatatctctatttttatcctctta 159  Q
    |||| |||||||||| || |||||||||||||| || ||||||| |||| ||||||||||||| ||||    
T  33951731 tttttaaaaagttaaatttatcacttttcacaattttccaatactatatttctatttttatcccctta 33951798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 34016649 - 34016723
Alignment:
Q  85 attttcacttttaaaaaagttaattcatcacttttcacaacttcccaatacaatatctctatttttatcctctta 159  Q
    ||||| |||||||||||  | ||||||||||||||||| | || ||||| | |||| ||||||||||||| ||||    
T  34016649 attttgacttttaaaaagttaaattcatcacttttcaccattttccaatgctatatttctatttttatcccctta 34016723  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 40593646 - 40593688
Alignment:
Q  106 aattcatcacttttcacaacttcccaatacaatatctctattt 148  Q
    ||||||||||||||||| | ||||||||||||||| |||||||    
T  40593646 aattcatcacttttcactatttcccaatacaatatttctattt 40593688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 26040448 - 26040371
Alignment:
Q  82 aatattttcacttttaaaaaagttaattcatcacttttcacaacttcccaatacaatatctctatttttatcctctta 159  Q
    |||||||| |||||||||||  | || | |||||||||||| | || ||||||| |||| ||||||||||||| ||||    
T  26040448 aatattttgacttttaaaaagttaaacttatcacttttcaccattttccaatactatatttctatttttatcccctta 26040371  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 52895775 - 52895824
Alignment:
Q  112 tcacttttcacaacttcccaatacaatatctctatttttatcctcttaac 161  Q
    ||||||||||||| ||| ||||||||| | |||||||||||| |||||||    
T  52895775 tcacttttcacaatttctcaatacaatgtttctatttttatcatcttaac 52895824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 34220734 - 34220655
Alignment:
Q  82 aatattttcacttttaaaaaagttaattcatcacttttcacaacttcccaatacaatatctctatttttatcctcttaac 161  Q
    |||||||| |||||||||||  | ||||||||||||||||| |||||||||| ||| || ||||||||||||||||||||    
T  34220734 aatattttaacttttaaaaacttaaattcatcacttttcaccacttcccaatgcaagatttctatttttatcctcttaac 34220655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 11659283 - 11659362
Alignment:
Q  82 aatattttcacttttaaaaaagttaattcatcacttttcacaacttcccaatacaatatctctatttttatcctcttaac 161  Q
    |||||||| | |||||||||  | ||||| ||||||||||| | ||  ||||||||||| | ||||||||||||||||||    
T  11659283 aatattttaatttttaaaaagttaaattcttcacttttcactatttttcaatacaatatttttatttttatcctcttaac 11659362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 353
Target Start/End: Complemental strand, 34681657 - 34681609
Alignment:
Q  305 gagatttcatgtgtgagtaaagtacattttttctaatgaatagttggtc 353  Q
    |||||||||||||||||| | | ||| || |||||||||||||||||||    
T  34681657 gagatttcatgtgtgagttatggacacttgttctaatgaatagttggtc 34681609  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 18875 - 18796
Alignment:
Q  82 aatattttcacttttaaaaaagttaattcatcacttttcacaacttcccaatacaatatctctatttttatcctcttaac 161  Q
    |||||||| | |||||||||  | |||||||||||||||||   |||||||| |||||| ||||||||||||||||||||    
T  18875 aatattttaatttttaaaaagttaaattcatcacttttcaccgtttcccaatgcaatatttctatttttatcctcttaac 18796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 13647109 - 13647045
Alignment:
Q  98 aaaaagttaa-ttcatcacttttcacaacttcccaatacaatatctctatttttatcctcttaac 161  Q
    |||||||||| ||||||||||||||| | ||  |||| |||||| ||||||||||||||||||||    
T  13647109 aaaaagttaaattcatcacttttcactatttttcaatccaatatttctatttttatcctcttaac 13647045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 26850582 - 26850503
Alignment:
Q  82 aatattttcacttttaaaaaagttaattcatcacttttcacaacttcccaatacaatatctctatttttatcctcttaac 161  Q
    |||||||| |||||||||||| | |||||||||||||| || | || | |||| ||||| | |||||||||||| |||||    
T  26850582 aatattttaacttttaaaaaattaaattcatcactttttaccattttctaatataatatttatatttttatcctattaac 26850503  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 49976229 - 49976150
Alignment:
Q  82 aatattttcacttttaaaaaagttaattcatcacttttcacaacttcccaatacaatatctctatttttatcctcttaac 161  Q
    |||||||| |||||||||||  | ||||||||||||||||| | |   ||||||||||  ||||||||||||||| ||||    
T  49976229 aatattttgacttttaaaaagttaaattcatcacttttcaccattagtcaatacaataattctatttttatcctcctaac 49976150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 19016 - 18946
Alignment:
Q  82 aatattttcacttttaaaaaagttaattcatcacttttcacaacttcccaatacaatatctctatttttat 152  Q
    |||||||| | |||||||||  | |||||||||||||||||   |||||||| |||||| |||||||||||    
T  19016 aatattttaatttttaaaaagttaaattcatcacttttcaccgtttcccaatgcaatatttctatttttat 18946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 164
Target Start/End: Original strand, 46160549 - 46160615
Alignment:
Q  99 aaaagtta-attcatcacttttcacaacttcccaatacaatatctctatttttatcctcttaactaa 164  Q
    |||||||| |||||||||||||||| || || || |  ||||| |||||||||||||||||||||||    
T  46160549 aaaagttacattcatcacttttcaccacctctcagtgaaatatttctatttttatcctcttaactaa 46160615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 51817400 - 51817323
Alignment:
Q  82 aatattttcacttttaaaaaagttaattcatcacttttcacaacttcccaatacaatatctctatttttatcctctta 159  Q
    |||||||| |||||||||||  | |||| |||||||||||| | || ||||| | |||| | ||||||||||||||||    
T  51817400 aatattttgacttttaaaaagttaaatttatcacttttcaccattttccaatgctatatttttatttttatcctctta 51817323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 150
Target Start/End: Complemental strand, 34060854 - 34060786
Alignment:
Q  82 aatattttcacttttaaaaaagttaattcatcacttttcacaacttcccaatacaatatctctattttt 150  Q
    |||||||| |||||||||||  | ||||||||||||||||| | ||  ||||||||||| | |||||||    
T  34060854 aatattttaacttttaaaaagttaaattcatcacttttcaccatttttcaatacaatatttttattttt 34060786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 91 - 161
Target Start/End: Original strand, 7532815 - 7532885
Alignment:
Q  91 acttttaaaaaagttaattcatcacttttcacaacttcccaatacaatatctctatttttatcctcttaac 161  Q
    |||||||||||  | ||||||||||||||||| | || |||||||||||| ||||||||||||| ||||||    
T  7532815 acttttaaaaacctaaattcatcacttttcaccattttccaatacaatatttctatttttatccccttaac 7532885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 19389397 - 19389321
Alignment:
Q  83 atattttcacttttaaaaaagttaattcatcacttttcacaacttcccaatacaatatctctatttttatcctctta 159  Q
    ||||||| |||||||||||  | |||| |||||||||||||| || ||||||| |||| ||||||||||||| ||||    
T  19389397 atattttgacttttaaaaagttaaatttatcacttttcacaattttccaatactatatttctatttttatcccctta 19389321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 11332878 - 11332803
Alignment:
Q  86 ttttcacttttaaaaaagttaattcatcacttttcacaacttcccaatacaatatctctatttttatcctcttaac 161  Q
    |||| |||||||||||  | ||||| ||||||| ||| | ||| ||||||||||| |||||||||||| |||||||    
T  11332878 ttttgacttttaaaaagttaaattcttcactttacaccatttctcaatacaatatttctatttttatcttcttaac 11332803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 6841774 - 6841706
Alignment:
Q  93 ttttaaaaaagtta-attcatcacttttcacaacttcccaatacaatatctctatttttatcctcttaa 160  Q
    |||| ||||||||| || ||||||||||||  | || | |||||||||| |||||||||||||||||||    
T  6841774 tttttaaaaagttatatacatcacttttcatcattttctaatacaatatttctatttttatcctcttaa 6841706  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 41492954 - 41493008
Alignment:
Q  106 aattcatcacttttcacaacttcccaatacaatatctctatttttatcctcttaac 161  Q
    ||||||||||||||||| |||||||||| |||||| |||| |||||||||||||||    
T  41492954 aattcatcacttttcaccacttcccaatgcaatatttcta-ttttatcctcttaac 41493008  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 40920206 - 40920287
Alignment:
Q  82 aatattttcacttttaaaaaagttaattcatcac--ttttcacaacttcccaatacaatatctctatttttatcctcttaac 161  Q
    |||||||| |||||||||||  | |||| |||||  ||||||| ||||| |||| |||||| ||||||||||||||||||||    
T  40920206 aatattttaacttttaaaaagttaaattaatcacacttttcaccacttctcaatgcaatatttctatttttatcctcttaac 40920287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 43168166 - 43168241
Alignment:
Q  86 ttttcacttttaaaaaagttaattcatcacttttcacaacttcccaatacaatatctctatttttatcctcttaac 161  Q
    |||| |||||||||||  | || || ||||||||||| | ||||||||||||| | |||||||||||| |||||||    
T  43168166 ttttgacttttaaaaagttaaactcttcacttttcaccatttcccaatacaatgtttctatttttatcatcttaac 43168241  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 44359753 - 44359678
Alignment:
Q  86 ttttcacttttaaaaaagttaattcatcacttttcacaacttcccaatacaatatctctatttttatcctcttaac 161  Q
    |||| |||||||||||  | ||||| ||||||||||| | ||||| ||||||| | |||||||||||| |||||||    
T  44359753 ttttgacttttaaaaagttaaattcttcacttttcaccatttcccgatacaatgtttctatttttatcatcttaac 44359678  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 22346322 - 22346252
Alignment:
Q  82 aatattttcacttttaaaaaagttaattcatcacttttcacaacttcccaatacaatatctctatttttat 152  Q
    |||||||| |||||||||||| | |||| |||||||||||| | ||  |||||| |||| |||||||||||    
T  22346322 aatattttgacttttaaaaaattaaatttatcacttttcaccatttttcaatactatatttctatttttat 22346252  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 34874591 - 34874665
Alignment:
Q  85 attttcacttttaaaaaagttaattcatcacttttcacaacttcccaatacaatatctctatttttatcctctta 159  Q
    ||||| |||||||||||| | |||| |||||||||||| | || ||||| | |||| ||||||||||||| ||||    
T  34874591 attttgacttttaaaaaattaaatttatcacttttcaccattttccaatgctatatttctatttttatcccctta 34874665  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 48938672 - 48938738
Alignment:
Q  98 aaaaagttaattcatcacttttcacaacttcccaatacaatatctctatttttatcctcttaactaa 164  Q
    ||||||| ||||  ||||||||||| | || | |||||||||| |||||||||||| ||||||||||    
T  48938672 aaaaagtaaatttttcacttttcaccattttctaatacaatatttctatttttatcatcttaactaa 48938738  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 49901962 - 49902024
Alignment:
Q  98 aaaaagttaa-ttcatcacttttcacaacttcccaatacaatatctctatttttatcctctta 159  Q
    |||||||||| || |||||||||||| | || ||||||| |||| ||||||||||||||||||    
T  49901962 aaaaagttaaatttatcacttttcaccattttccaatactatatttctatttttatcctctta 49902024  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 50295518 - 50295449
Alignment:
Q  82 aatattttcacttttaaaaaagttaattcatcacttttcacaacttcccaatacaatatctctattttta 151  Q
    |||||||| |||||||||||  | |||| |||||||||||| | || ||||||| |||| ||||||||||    
T  50295518 aatattttgacttttaaaaagttaaatttatcacttttcactattttccaatactatatttctattttta 50295449  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 894960 - 895016
Alignment:
Q  91 acttttaaaaaagttaattcatcacttttcacaacttcccaatacaatatctctatt 147  Q
    |||||||||||  | |||||||||||||||||||||| |||| | ||||| ||||||    
T  894960 acttttaaaaagttgaattcatcacttttcacaactttccaacataatatttctatt 895016  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 49060944 - 49060996
Alignment:
Q  305 gagatttcatgtgtgagtaaagtacattttttctaatgaatagttggtccaaa 357  Q
    |||||||||||||||||| | | |||||| |||| ||||||||||||| ||||    
T  49060944 gagatttcatgtgtgagttatgcacatttattctgatgaatagttggttcaaa 49060996  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 42222242 - 42222324
Alignment:
Q  82 aatattttcacttttaaaaaagttaattcatcacttttcacaacttcccaatacaatatctctatttttatcctcttaactaa 164  Q
    |||||||| |||||||||||  | |||| |||||||||||| | || ||||||| |||| ||||||||||||| |||| ||||    
T  42222242 aatattttgacttttaaaaagttaaatttatcacttttcaccattttccaataccatatttctatttttatccccttatctaa 42222324  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 153
Target Start/End: Complemental strand, 43958171 - 43958100
Alignment:
Q  82 aatattttcacttttaaaaaagttaattcatcacttttcacaacttcccaatacaatatctctatttttatc 153  Q
    |||||||| |||||||||||| | |||| |||| ||||||||| || | ||||| |||| ||||||||||||    
T  43958171 aatattttgacttttaaaaaattaaatttatcatttttcacaattttctaatactatatttctatttttatc 43958100  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 31360356 - 31360298
Alignment:
Q  106 aattcatcacttttcacaacttcccaatacaatatctctatttttatcctcttaactaa 164  Q
    |||| ||||||||| || | ||||||||||||||| |||||||||||| ||| ||||||    
T  31360356 aatttatcactttttaccatttcccaatacaatatttctatttttatcttctaaactaa 31360298  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 48879691 - 48879743
Alignment:
Q  82 aatattttcacttttaaaaaagttaattcatcacttttcacaacttcccaata 134  Q
    |||||||| |||||||||||| | ||||| ||||||||||| | |||||||||    
T  48879691 aatattttaacttttaaaaaattaaattcttcacttttcactatttcccaata 48879743  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 160
Target Start/End: Complemental strand, 27127595 - 27127517
Alignment:
Q  82 aatattttcacttttaaaaaagttaattcatcacttttcacaacttcccaatacaatatctctatttttatcctcttaa 160  Q
    ||||| || |||||||||||  | ||||||||| ||||||| | ||| ||||||||||| |||||||||||| ||||||    
T  27127595 aatatcttgacttttaaaaagttaaattcatcatttttcaccatttctcaatacaatatttctatttttatcatcttaa 27127517  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 28014656 - 28014735
Alignment:
Q  82 aatattttcacttttaaaaaagttaattcatcacttttcacaacttcccaatacaatatctctatttttatcctcttaac 161  Q
    |||||||| |||||||||||    || |||||| ||||||| | ||||||||||||||| |||| ||||| |||||||||    
T  28014656 aatattttaacttttaaaaagtcaaactcatcatttttcaccatttcccaatacaatatttctaattttaccctcttaac 28014735  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 12191517 - 12191591
Alignment:
Q  85 attttcacttttaaaaaagttaattcatcacttttcacaacttcccaatacaatatctctatttttatcctctta 159  Q
    ||||| |||||||||||| | |||| |||||||||||| | || ||||| | |||| ||||||||||||| ||||    
T  12191517 attttgacttttaaaaaattaaatttatcacttttcaccatttaccaatgctatatttctatttttatccactta 12191591  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 12402911 - 12402842
Alignment:
Q  83 atattttcacttttaaaaaagttaattcatcacttttcacaacttcccaatacaatatctctatttttat 152  Q
    ||||||| |||||||||||| | || |||||| ||||||| | |||  |||||||||| |||||||||||    
T  12402911 atattttaacttttaaaaaactaaaatcatcatttttcaccatttcttaatacaatatttctatttttat 12402842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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