View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10816_high_3 (Length: 277)
Name: NF10816_high_3
Description: NF10816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10816_high_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 39147734 - 39148007
Alignment:
| Q |
1 |
ctagcttcagccaaagaaaccctcctcaacattttggaaaacgagtttctatcaaattcaaaatcatctattttttcgtcatcatcattttcgaccgcgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39147734 |
ctagcttcagccaaagaaaccctcctcaacattttggaaaacgagtttctatcaaattcaaaatcatctattttttcgtcatcatcattttcaaccgcgc |
39147833 |
T |
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| Q |
101 |
aagtatcacaaacttgatcatcatcatcaccattattttcatcgttctcaacaatagttccttctctttcatgattcccttgctcccctttccaaacatt |
200 |
Q |
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|||||||||||||||| ||||||||||||||| |||||||| || ||| ||| ||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
39147834 |
aagtatcacaaacttg---atcatcatcaccattgttttcatcattatcagtaattgtttcttctctttcatgattcccttgttcccctttccaaacatt |
39147930 |
T |
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| Q |
201 |
cttcacatgcaaaatcttcaaaacccaattctctctctgcccctccctacaatcctcaccgtcatccccaacggttt |
277 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39147931 |
cttgacatgcaaaatcttcaaaacccaattctctctctgcccctccctacaatcctcaccgtcatccccaacggttt |
39148007 |
T |
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