View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10816_high_7 (Length: 209)
Name: NF10816_high_7
Description: NF10816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10816_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 15645538 - 15645356
Alignment:
| Q |
17 |
aatttcaactgtcattgctaccggagtgtttgctgctgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacatca |
116 |
Q |
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| T |
15645538 |
aatttcaactgtcattgctaccggagtgtttgctgctgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacatca |
15645439 |
T |
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| Q |
117 |
ttcttggtgttttcaatatcagatgcatctgcattcatctcatctgcgactgcgatattgattttcttgtctattcttctctc |
199 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15645438 |
ttcttggtgtttgcaatatcagatgcatctgcattcatctcatctgcgactgcgatattgattttcttgtctattcttgtctc |
15645356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 15654590 - 15654408
Alignment:
| Q |
17 |
aatttcaactgtcattgctaccggagtgtttgctgctgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacatca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15654590 |
aatttcaactgtcattgctaccggagtgtttgctgctgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacatca |
15654491 |
T |
|
| Q |
117 |
ttcttggtgttttcaatatcagatgcatctgcattcatctcatctgcgactgcgatattgattttcttgtctattcttctctc |
199 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15654490 |
ttcttggtgtttgcaatatcagatgcatctgcattcatctcatctgcgactgcgatattgattttcttgtctattcttgtctc |
15654408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 15624913 - 15624731
Alignment:
| Q |
17 |
aatttcaactgtcattgctaccggagtgtttgctgctgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacatca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
15624913 |
aatttcaactgtcattgctaccggagtgtttgctgctgcaactactttaccaggcggtaccgatgattctggaaaaccacactatttgaataaaacatca |
15624814 |
T |
|
| Q |
117 |
ttcttggtgttttcaatatcagatgcatctgcattcatctcatctgcgactgcgatattgattttcttgtctattcttctctc |
199 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||| |||| |
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| T |
15624813 |
ttcttggtgtttgcaatatcagatgcatttgcattcatctcatctgcgaccgcgatattgattttcttgtcgattcttgtctc |
15624731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 15534137 - 15533955
Alignment:
| Q |
17 |
aatttcaactgtcattgctaccggagtgtttgctgctgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacatca |
116 |
Q |
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||||||||| |||||||||||||||||||| ||||||||| |||||||||||| |||||||||||| | ||||||||| |||| |||| |||||| || |
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| T |
15534137 |
aatttcaacagtcattgctaccggagtgttcgctgctgcagttactttaccaggtggtaccgatgacaccggaaaaccaaactagttgacgaaaacacca |
15534038 |
T |
|
| Q |
117 |
ttcttggtgttttcaatatcagatgcatctgcattcatctcatctgcgactgcgatattgattttcttgtctattcttctctc |
199 |
Q |
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|||||||| ||| ||| ||||||||||||||||||||| |||||| |||| || |||||||||||||||||||||||| |||| |
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| T |
15534037 |
ttcttggtatttgcaacatcagatgcatctgcattcatttcatcttcgaccgccatattgattttcttgtctattcttgtctc |
15533955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 15493798 - 15493621
Alignment:
| Q |
17 |
aatttcaactgtcattgctaccggagtgtttgctgctgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacatca |
116 |
Q |
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||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||| | ||||||||| |||| ||||| ||| ||||| |
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| T |
15493798 |
aatttcaacagtcattgctactggagtgttcgctgctgcaactactttaccaggtggtaccgatgacacaggaaaaccaaactacttgaagaaaccatca |
15493699 |
T |
|
| Q |
117 |
ttcttggtgttttcaatatcagatgcatctgcattcatctcatctgcgactgcgatattgattttcttgtctattctt |
194 |
Q |
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|||||||||||| |||||||||| ||| |||||| |||||| || |||| ||||||||||| ||||||||||||||| |
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| T |
15493698 |
ttcttggtgtttgcaatatcagacacatttgcatttatctcagcttcgaccgcgatattgatattcttgtctattctt |
15493621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 15517624 - 15517442
Alignment:
| Q |
17 |
aatttcaactgtcattgctaccggagtgtttgctgctgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacatca |
116 |
Q |
| |
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||||||||| |||||||||||||||||||| ||||||||| |||||||||||| |||| |||| || | ||||||||| ||| |||||| ||| ||||| |
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| T |
15517624 |
aatttcaacagtcattgctaccggagtgttcgctgctgcagttactttaccaggtggtatcgataacacaggaaaaccaaactttttgaagaaaccatca |
15517525 |
T |
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| Q |
117 |
ttcttggtgttttcaatatcagatgcatctgcattcatctcatctgcgactgcgatattgattttcttgtctattcttctctc |
199 |
Q |
| |
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|| |||| |||| ||||||||||||||||||| ||||| |||||| |||| || |||||||||||||||||||||||| |||| |
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| T |
15517524 |
tttttggggtttgcaatatcagatgcatctgcgttcatttcatcttcgacagccatattgattttcttgtctattcttgtctc |
15517442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 15601321 - 15601210
Alignment:
| Q |
17 |
aatttcaactgtcattgctaccggagtgtttgctgctgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacatca |
116 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| | ||||||||| | |||||||| ||| ||||| |
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| T |
15601321 |
aatttcagccgtcattgctaccggagtgtttgctgctgcaactactgtaccaggcggtatcgatgacacaggaaaaccaaattatttgaagaaaccatca |
15601222 |
T |
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| Q |
117 |
ttcttggtgttt |
128 |
Q |
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|| ||||||||| |
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| T |
15601221 |
tttttggtgttt |
15601210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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