View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10816_low_1 (Length: 392)
Name: NF10816_low_1
Description: NF10816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10816_low_1 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 11 - 392
Target Start/End: Complemental strand, 45123581 - 45123200
Alignment:
| Q |
11 |
tgagatgaagaccgttaaaaatacatttaatcaatacatcatcactaatattcataatattctgtaatagacattcatagaaggatacatttgagaaaca |
110 |
Q |
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| T |
45123581 |
tgagatgaagaccgttaaaaatacatttaatcaatacatcatcactaatattcataatattttgtaatagacattcatagaaggatatatttgagaaaca |
45123482 |
T |
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| Q |
111 |
tttttcatagttgaagacaaaattgtgttggaaaagatcaacatagagaaaataaagaaacacaatcacatcataggtggaaacttcaaaaagcggagac |
210 |
Q |
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| T |
45123481 |
tttttcatagttgaagacaaaattgtgttggaaaagatcaacatagagaaaataaagaaacacaatcacaacataggtagaaacttcaaaaagcggagac |
45123382 |
T |
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| Q |
211 |
gaaactatgatcattgtccaataacaactagaaaataatactatatgcaaacttttacaacacatagactagtcaaacactccattgatcccggtacacc |
310 |
Q |
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| T |
45123381 |
gaaactatgatcattgtccaatgacaactagaaaataatactatatgcaaacttttacaacacatagactagtcaaacactccattgaccccgatacacc |
45123282 |
T |
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| Q |
311 |
cacaatctccaaagcaataccaaactatatctacaacactctaccgcaagagtataatagaaaagataaaattcatatatat |
392 |
Q |
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| T |
45123281 |
cacaatctccaaagcaataccaaactatatctacaacactctaccgcaagagtataatagaaaagataaaattcagatatat |
45123200 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 270
Target Start/End: Original strand, 22190644 - 22190691
Alignment:
| Q |
223 |
attgtccaataacaactagaaaataatactatatgcaaacttttacaa |
270 |
Q |
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| T |
22190644 |
attgtccaatgacaactagagaataacactatatgcaaatttttacaa |
22190691 |
T |
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