View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10816_low_13 (Length: 220)
Name: NF10816_low_13
Description: NF10816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10816_low_13 |
 | |
|
| [»] scaffold0182 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 36969051 - 36968866
Alignment:
| Q |
16 |
atgaaactcgtaacagaatcaaaaaacagaatgagtgttgaataaaattgaattaccaccgtgaatcaagttctggacggcgaggtaacgagaacggaga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36969051 |
atgaaactcgtaacagaatcaaaaaacagaatgagtgttgaataaaattgaattaccaccgcgaatcaagttctggacggcgaggtaacgagaacggaga |
36968952 |
T |
|
| Q |
116 |
actcgacggccgttactagtttgataatcaacttcgtcaccgttatcaacgacgtcactgttatcatcatcgtcctcgctgctcat |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36968951 |
actcgacggccgttactagtttgataatcaacttcgtcaccgttatcaacgacgtcactgttatcatcatcgtcctcgcagctcat |
36968866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 21723638 - 21723501
Alignment:
| Q |
16 |
atgaaactcgtaacagaatcaaaaaacagaatgagtgttgaataaaattgaattaccaccgtgaatcaagttctggacggcgaggtaacgagaacggaga |
115 |
Q |
| |
|
|||||||||| |||||||| | ||||||||||||| |||||||||||||||||| | ||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
21723638 |
atgaaactcgaaacagaattagaaaacagaatgagcgttgaataaaattgaattcctaccgtgaatcatgttctggacggcgcggtaacgagaacggaga |
21723539 |
T |
|
| Q |
116 |
actcgacggccgttactagtttgataatcaacttcgtc |
153 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21723538 |
tctcgacggtcgttactagtttgataatcaacttcgtc |
21723501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 13379288 - 13379425
Alignment:
| Q |
16 |
atgaaactcgtaacagaatcaaaaaacagaatgagtgttgaataaaattgaattaccaccgtgaatcaagttctggacggcgaggtaacgagaacggaga |
115 |
Q |
| |
|
||||||||||||||||||| | |||||| |||||| |||||||||||||||||||| ||| ||||||| ||||||||| ||||| ||||||||||||||| |
|
|
| T |
13379288 |
atgaaactcgtaacagaattagaaaacataatgagcgttgaataaaattgaattactaccttgaatcatgttctggacagcgagataacgagaacggaga |
13379387 |
T |
|
| Q |
116 |
actcgacggccgttactagtttgataatcaacttcgtc |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13379388 |
actcgacggccgttactagtttgataatcaacttcgtc |
13379425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 32274 - 32137
Alignment:
| Q |
16 |
atgaaactcgtaacagaatcaaaaaacagaatgagtgttgaataaaattgaattaccaccgtgaatcaagttctggacggcgaggtaacgagaacggaga |
115 |
Q |
| |
|
|||||||||| |||||||| | ||||||||||||| |||||||||||||||||| | ||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
32274 |
atgaaactcgaaacagaattagaaaacagaatgagcgttgaataaaattgaattcctaccgtgaatcatgttctggacggcgcggtaacgagaacggaga |
32175 |
T |
|
| Q |
116 |
actcgacggccgttactagtttgataatcaacttcgtc |
153 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32174 |
tctcgacggtcgttactagtttgataatcaacttcgtc |
32137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University