View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10816_low_3 (Length: 335)

Name: NF10816_low_3
Description: NF10816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10816_low_3
NF10816_low_3
[»] chr7 (3 HSPs)
chr7 (127-214)||(44491179-44491266)
chr7 (272-320)||(44491325-44491373)
chr7 (287-323)||(5462970-5463006)
[»] chr5 (2 HSPs)
chr5 (276-317)||(1191549-1191590)
chr5 (276-317)||(4824948-4824989)
[»] chr4 (2 HSPs)
chr4 (276-317)||(1966628-1966669)
chr4 (276-317)||(19849512-19849553)
[»] chr3 (1 HSPs)
chr3 (276-317)||(36229003-36229044)
[»] chr8 (2 HSPs)
chr8 (282-322)||(20269603-20269643)
chr8 (282-322)||(21056232-21056272)


Alignment Details
Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 127 - 214
Target Start/End: Original strand, 44491179 - 44491266
Alignment:
Q  127 cctacactcacccaacaagtactgtcttattcttatcgtgtaattcccccattaagaatggattaaggttcttttcgaagagagacat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44491179 cctacactcacccaacaagtactgtcttattcttatcgtgtaattcccccattaagaatggattaaggttcttttcgaagagagacat 44491266  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 272 - 320
Target Start/End: Original strand, 44491325 - 44491373
Alignment:
Q  272 ggtcgaagttgtaagccattgaaactaaactcacacacaactgtgaaat 320  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  44491325 ggtcgaagttgtaagccattgaaactaaactcacacacagctgtgaaat 44491373  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 323
Target Start/End: Original strand, 5462970 - 5463006
Alignment:
Q  287 ccattgaaactaaactcacacacaactgtgaaatctc 323  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  5462970 ccattgaaattaaactcacacacaactgtgagatctc 5463006  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 317
Target Start/End: Original strand, 1191549 - 1191590
Alignment:
Q  276 gaagttgtaagccattgaaactaaactcacacacaactgtga 317  Q
    |||||||||||||| ||||| ||||||||||||||| |||||    
T  1191549 gaagttgtaagccactgaaattaaactcacacacaattgtga 1191590  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 317
Target Start/End: Original strand, 4824948 - 4824989
Alignment:
Q  276 gaagttgtaagccattgaaactaaactcacacacaactgtga 317  Q
    ||||| |||| ||||||||| |||||||||||||||||||||    
T  4824948 gaagtggtaatccattgaaaataaactcacacacaactgtga 4824989  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 317
Target Start/End: Complemental strand, 1966669 - 1966628
Alignment:
Q  276 gaagttgtaagccattgaaactaaactcacacacaactgtga 317  Q
    |||||||||| ||| ||||| |||||||||||||||||||||    
T  1966669 gaagttgtaatccactgaaattaaactcacacacaactgtga 1966628  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 317
Target Start/End: Original strand, 19849512 - 19849553
Alignment:
Q  276 gaagttgtaagccattgaaactaaactcacacacaactgtga 317  Q
    ||||| |||| ||||||||| |||||||||||||||||||||    
T  19849512 gaagtggtaaaccattgaaaataaactcacacacaactgtga 19849553  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 317
Target Start/End: Original strand, 36229003 - 36229044
Alignment:
Q  276 gaagttgtaagccattgaaactaaactcacacacaactgtga 317  Q
    ||||| |||| ||||||||| |||||||||||||||||||||    
T  36229003 gaagtggtaatccattgaaaataaactcacacacaactgtga 36229044  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 322
Target Start/End: Complemental strand, 20269643 - 20269603
Alignment:
Q  282 gtaagccattgaaactaaactcacacacaactgtgaaatct 322  Q
    |||| ||||||||| ||||||||||||||||||||| ||||    
T  20269643 gtaatccattgaaaataaactcacacacaactgtgagatct 20269603  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 322
Target Start/End: Complemental strand, 21056272 - 21056232
Alignment:
Q  282 gtaagccattgaaactaaactcacacacaactgtgaaatct 322  Q
    |||| ||||||||| ||||||||||||||||||||| ||||    
T  21056272 gtaatccattgaaaataaactcacacacaactgtgagatct 21056232  T

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