View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10816_low_4 (Length: 316)
Name: NF10816_low_4
Description: NF10816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10816_low_4 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 5 - 271
Target Start/End: Original strand, 41968926 - 41969181
Alignment:
| Q |
5 |
tttagagatgagattttttaagtttatgaatttgtggttccatgcttgagtattgttacattggaaaagaagtgagaaagaagaacctataacgaataaa |
104 |
Q |
| |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41968926 |
tttatagatgagattttttaagtttatgaattcgtggttccatgcttgagtattgttacattggaaaag-----------aagaacctataacgaataaa |
41969014 |
T |
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| Q |
105 |
gtgaggtgagtgggagtaaatggtgagggtaattgtgcaatgttttggcagcatccataacaatcgaaatcgcggaaaacccttgatcaagtttataaat |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41969015 |
gtgaggtgagtgggagtaaatggtgagggtaattgtgcaatgttttggcagcaccggtaacaatcgaaatcgcggaaaacccttgatcaagtttataaat |
41969114 |
T |
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| Q |
205 |
attatacttgtgattcacatatttaaaggaaaaacttatatccaaaaataaaattatggacgaaggt |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41969115 |
attatacttgtgattcacatatttaaaggaaaaacttatatccaaaaataaaattatggacgaaggt |
41969181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 5 - 151
Target Start/End: Complemental strand, 3722597 - 3722450
Alignment:
| Q |
5 |
tttagagatgagattttttaa-gtttatgaatttgtggttccatgcttgagtattgttacattggaaaagaagtgagaaagaagaacctataacgaataa |
103 |
Q |
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||||||||||||||||||| | ||||||||||| |||||||||| || ||| || ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3722597 |
tttagagatgagatttttttatgtttatgaattagtggttccataattcggtaccgtgacattggaaaagaagtgagaaagaagaacctataaagaataa |
3722498 |
T |
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| Q |
104 |
agtgaggtgagtgggagtaaatggtgagggtaattgtgcaatgttttg |
151 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
3722497 |
tgtgaggtgagtgagaggaaatggtgagggtaattgtgcaatgttttg |
3722450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 32953608 - 32953742
Alignment:
| Q |
7 |
tagagatgagattttttaagtttatgaatttgtggttccatgcttgagtattgttacattggaaaagaagtgagaaagaagaacctataacgaataaagt |
106 |
Q |
| |
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|||||||||||||||| ||||||||||| || ||| | || || | |||||| |||||| |||| |||| |||||| | ||||| || ||||||||| |
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| T |
32953608 |
tagagatgagatttttggtgtttatgaattcgttgttgcttgtttcaatattgtgacattgaaaaataagtaagaaagtaaaacctggaaagaataaagt |
32953707 |
T |
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| Q |
107 |
gaggtgagtgggagtaaatggtgagggtaattgtg |
141 |
Q |
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| T |
32953708 |
ggggtgagtgagagtaactggtgaaggtaattgtg |
32953742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 35739690 - 35739771
Alignment:
| Q |
5 |
tttagagatgagattttttaagtttatgaatttgtggttccatgcttgagtattgttacattggaaaagaagtgagaaagaa |
86 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| ||| ||| |||||||||||||||| |||||||| |
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| T |
35739690 |
tttagagatgagattttttatgtttatgaatttgtggttccatgcttcagttctgtgacattggaaaagaagttagaaagaa |
35739771 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 37080878 - 37080806
Alignment:
| Q |
5 |
tttagagatgagattttttaagtttatgaatttgtggttccatgcttgagtattgttacattggaaaagaagt |
77 |
Q |
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||||||||||||||| || |||||||||||||||||| | ||||| |||||||| ||| |||||||||||| |
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| T |
37080878 |
tttagagatgagattattggtgtttatgaatttgtggttgcttgcttcagtattgtgacaatggaaaagaagt |
37080806 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 144
Target Start/End: Complemental strand, 7805712 - 7805573
Alignment:
| Q |
5 |
tttagagatgagattttttaagtttatgaatttgtggttccatgcttgagtattgttacattggaaaagaagtgagaaagaagaacctataacgaataaa |
104 |
Q |
| |
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|||||||||| ||||||| ||||||||||| || ||| | ||||| ||||| || |||||||||||||||| ||||||||||||| || |||||| |
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| T |
7805712 |
tttagagatgggatttttggtgtttatgaattcgtagttgcttgcttcagtatcgtgacattggaaaagaagtttgaaagaagaacctcgaaataataaa |
7805613 |
T |
|
| Q |
105 |
gtgaggtgagtgggagtaaatggtgagggtaattgtgcaa |
144 |
Q |
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||||||||||| ||| || |||||||||||||||||||| |
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| T |
7805612 |
gtgaggtgagttagagaaagtggtgagggtaattgtgcaa |
7805573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 185 - 271
Target Start/End: Original strand, 1236150 - 1236237
Alignment:
| Q |
185 |
ccttgatcaagtttataaatattatacttgtgattcacatatttaaagg-aaaaacttatatccaaaaataaaattatggacgaaggt |
271 |
Q |
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|||| |||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||| ||||||||||||||| ||||||||| |
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| T |
1236150 |
ccttcatcaagttaataaatattatacttgtgattcacatgtttaaaggaaaaaatttatatacaaaaataaaattatagacgaaggt |
1236237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 114
Target Start/End: Original strand, 36033683 - 36033789
Alignment:
| Q |
7 |
tagagatgagattttttaagtttatgaatttgtggttccatgcttgagtattgttacattggaaaagaagtgagaaagaagaacctataacgaataaagt |
106 |
Q |
| |
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|||||||||||||||| ||||||||||| |||||| | ||||| |||| ||| |||||| |||||||||||| ||| ||||||| || ||||||||| |
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| T |
36033683 |
tagagatgagatttttgt-gtttatgaattcgtggttgcttgcttcagtaatgtgacattgaaaaagaagtgagtaagtagaacctggaaagaataaagt |
36033781 |
T |
|
| Q |
107 |
gaggtgag |
114 |
Q |
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| |||||| |
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| T |
36033782 |
ggggtgag |
36033789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 228951 - 228870
Alignment:
| Q |
5 |
tttagagatgagattttttaagtttatgaatttgtggttccatgcttgagtattgttacattggaaaagaagtgagaaagaa |
86 |
Q |
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|||||||||||||| ||| |||||||||| |||||| | ||||| |||| || |||||||||||||| |||||||||| |
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| T |
228951 |
tttagagatgagatatttggtgtttatgaatccgtggttgcttgctttagtacagtgacattggaaaagaaatgagaaagaa |
228870 |
T |
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