View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10816_low_5 (Length: 277)
Name: NF10816_low_5
Description: NF10816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10816_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 32183208 - 32183456
Alignment:
| Q |
18 |
attcatttgagtgaatcttgtttgccatgtctccttgtttaatttgtttagctatctccatcacataaggcaaatatgaatcaatgatcttgtctttgtg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32183208 |
attcatttgagtgaatcttgtttgccatgtctccttgtttaatttgtttagctatctccatcacataaggcaaatatgaatcaatgatcttgtctttgtg |
32183307 |
T |
|
| Q |
118 |
tttcttgtgaaaagtcagctcataggatcttatttctgacacagccgaggagtcatcatcgtaacttcgaatccgcgaagagtccacttctatgcaaatt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32183308 |
cttcttgtgaaaagtcagctcataggatcttatttctgacacagccgaggagtcatcatcgtaacttcgaatccgcgaagagtccacttctatgcaaatt |
32183407 |
T |
|
| Q |
218 |
agtttccactttacactaataccttcgaaaacatcactcacttcttcat |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32183408 |
agtttccactttacactaataccttcgaaaacatcactcacttcttcat |
32183456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 32175190 - 32175435
Alignment:
| Q |
18 |
attcatttgagtgaatcttgtttgccatgtctccttgtttaatttgtttagctatctccatcacataaggcaaatatgaatcaatgatcttgtctttgtg |
117 |
Q |
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||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
32175190 |
attcaattgagtgaatcttgattgccgtgtttccttgtttaatttgtttagctatctccatcacataaggaaaatatgaatcaatgatcttgtttttgtg |
32175289 |
T |
|
| Q |
118 |
tttcttgtgaaaagtcagctcataggatcttatttctgacacagccgaggagtcatcatcgtaacttcgaatccgcgaagagtccacttctatgcaaatt |
217 |
Q |
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| T |
32175290 |
tttattgtgaaaacttagctcatatgatcttaattctgactcggc---tgagtcattatcataacttcgaatccgcgaagagtccacttgtatgcaaatt |
32175386 |
T |
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| Q |
218 |
agtttccactttacactaataccttcgaaaacatcactcacttcttcat |
266 |
Q |
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||||||||||||||||||| |||| | |||||||||||||||||||||| |
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| T |
32175387 |
agtttccactttacactaacacctccaaaaacatcactcacttcttcat |
32175435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 22 - 266
Target Start/End: Original strand, 32119548 - 32119792
Alignment:
| Q |
22 |
atttgagtgaatcttgtttgccatgtctccttgtttaatttgtttagctatctccatcacataaggcaaatatgaatcaatgatcttgtctttgtgtttc |
121 |
Q |
| |
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||||||| |||||||| ||||||||| ||||||||| ||||| ||||||||||| ||||||||||||||||||||||| | ||||||| ||||||||| |
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| T |
32119548 |
atttgagcgaatcttgattgccatgtttccttgtttcatttgattagctatctcaatcacataaggcaaatatgaatcgaaaatcttgttcttgtgtttc |
32119647 |
T |
|
| Q |
122 |
ttgtgaaaagtcagctcataggatcttatttctgacacagccgaggagtcatcatcgtaacttcgaatccgcgaagagtccacttctatgcaaattagtt |
221 |
Q |
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||||||||||| |||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||| ||| || | |||||||||||||| |
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| T |
32119648 |
ttgtgaaaagttagctcataggatcttatttctgacacggctgaggagtcatcactgtaacttcgaatccgcgacttgtctacctgtatgcaaattagtt |
32119747 |
T |
|
| Q |
222 |
tccactttacactaataccttcgaaaacatcactcacttcttcat |
266 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32119748 |
tccactttacactaataccttcaaaaacatcactcacttcttcat |
32119792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 32158907 - 32159155
Alignment:
| Q |
18 |
attcatttgagtgaatcttgtttgccatgtctccttgtttaatttgtttagctatctccatcacataaggcaaatatgaatcaatgatcttgtctttgtg |
117 |
Q |
| |
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|||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||| ||||| |
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| T |
32158907 |
attcatttgagtaaatcttgattgccatgtctccttgtttaatctgtttagctatctccatcacataaggcaaatatgaatcgaagatcttgttcttgtg |
32159006 |
T |
|
| Q |
118 |
tttcttgtgaaaagtcagctcataggatcttatttctgacacagccgaggagtcatcatcgtaacttcgaatccgcgaagagtccacttctatgcaaatt |
217 |
Q |
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|
|||||||||||||| |||||||||||||||||||||||||| | |||||||||| ||||||| || ||| | || ||||| |||| ||| || ||| |
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| T |
32159007 |
cttcttgtgaaaagttagctcataggatcttatttctgacacgggtgaggagtcattatcgtaatgtctaattcttgatgagtcgacttgtatacatatt |
32159106 |
T |
|
| Q |
218 |
agtttccactttacactaataccttcgaaaacatcactcacttcttcat |
266 |
Q |
| |
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||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
32159107 |
agtttccactttacactaacaccttcaaaaacatcactcacttcttcat |
32159155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 49 - 269
Target Start/End: Original strand, 32111532 - 32111752
Alignment:
| Q |
49 |
tccttgtttaatttgtttagctatctccatcacataaggcaaatatgaatcaatgatcttgtctttgtgtttcttgtgaaaagtcagctcataggatctt |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||| |
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| T |
32111532 |
tccttgtttaatttgtttagctatctccatcacataaggcaaatatgaatcaatgatcttgtttttgtgtttcttgtgaaaagttagctcatatgatctt |
32111631 |
T |
|
| Q |
149 |
atttctgacacagccgaggagtcatcatcgtaacttcgaatccgcgaagagtccacttctatgcaaattagtttccactttacactaataccttcgaaaa |
248 |
Q |
| |
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||||||||||||| ||||||| | ||| || ||||| | || ||||| |||| |||||| |||||||||||||||||||||| |||||| |||| |
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| T |
32111632 |
atttctgacacaggcgaggagcccctatcaaaatgtcgaactcttgatgagtcgacttgtatgcatattagtttccactttacactaacaccttcaaaaa |
32111731 |
T |
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| Q |
249 |
catcactcacttcttcatctc |
269 |
Q |
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||||||||||||||||||||| |
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| T |
32111732 |
catcactcacttcttcatctc |
32111752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 32205650 - 32205512
Alignment:
| Q |
20 |
tcatttgagtgaatcttgtttgccatgtctccttgtttaatttgtttagctatctccatcacataaggcaaatatgaatcaatgatcttgtctttgtgtt |
119 |
Q |
| |
|
|||||||||||||||||| | ||||||| | ||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
32205650 |
tcatttgagtgaatcttgatagccatgtttgcttctttaatttgtttagccatctccatcacataaggcaaatatgaatcgatgatcttgttcttgtgtt |
32205551 |
T |
|
| Q |
120 |
tcttgtgaaaagtcagctcataggatcttatttctgaca |
158 |
Q |
| |
|
||||||||||||| || ||||||||||| |||||||||| |
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| T |
32205550 |
tcttgtgaaaagttagttcataggatctaatttctgaca |
32205512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 32211372 - 32211232
Alignment:
| Q |
19 |
ttcatttgagtgaatcttgtttgccatgtctccttgtttaatttgtttagctatctccatcacataaggcaaatatgaatcaatgatcttgtctttgtgt |
118 |
Q |
| |
|
|||| ||||| |||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||| ||| |||||| |
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| T |
32211372 |
ttcagttgagagaatcttgatagccatgtttccttgtttaatttgtttagctatctccatcacataagggaaatatgaatcgaagatcgtgttcttgtgt |
32211273 |
T |
|
| Q |
119 |
ttcttgtgaaaagtcagctcataggatcttatttctgacac |
159 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||||||||||| |
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| T |
32211272 |
ttcttgtgaaaagttagttcataggatctaatttctgacac |
32211232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 266
Target Start/End: Original strand, 32178495 - 32178565
Alignment:
| Q |
197 |
gagtccacttctatgcaaattagtttccactttacactaataccttc-gaaaacatcactcacttcttcat |
266 |
Q |
| |
|
||||| |||| ||| || |||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
32178495 |
gagtcgacttgtatacatattagtttccactttacactaacaccttcaaaaaacatcactcacttcttcat |
32178565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 265
Target Start/End: Complemental strand, 32205462 - 32205405
Alignment:
| Q |
208 |
tatgcaaattagtttccactttacactaataccttcgaaaacatcactcacttcttca |
265 |
Q |
| |
|
|||||| |||| |||||||||||| ||||||||||| ||| ||||||||||||||||| |
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|
| T |
32205462 |
tatgcatattaatttccactttactctaataccttcaaaatcatcactcacttcttca |
32205405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 265
Target Start/End: Complemental strand, 32211183 - 32211126
Alignment:
| Q |
208 |
tatgcaaattagtttccactttacactaataccttcgaaaacatcactcacttcttca |
265 |
Q |
| |
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|||||| |||| |||||||||||| |||||||||| ||| ||||||||||||||||| |
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| T |
32211183 |
tatgcatattaatttccactttactgtaataccttcaaaatcatcactcacttcttca |
32211126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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