View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10816_low_9 (Length: 240)
Name: NF10816_low_9
Description: NF10816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10816_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 45123187 - 45122965
Alignment:
| Q |
1 |
tctgactgatgcatcttgaaatacagaaatcgagcttatatataagtatcactttgtttgttttgcacttcaagaaacaatattgtcacctacaagactt |
100 |
Q |
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| T |
45123187 |
tctgattgatgtatcttgaaatacagaaatcgagcttatatataggtatcactttgtttgtcttgcacttcaagaaacaatattgtcacctacaagactt |
45123088 |
T |
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| Q |
101 |
gtcaagcaataaagtaaataagtggaggaatcaccttgttcttcttgcaaagatcacgaaacaaccttgcttatcttgttctacctcttcttttataatt |
200 |
Q |
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| T |
45123087 |
gtcaagcaataaagtaaacaagtggaggaatcatcttgttcttcttacaaagatcacgaaacaaccttgtttatcttgttctacctcttcttttataatt |
45122988 |
T |
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| Q |
201 |
taagtagttaatgtaggacttct |
223 |
Q |
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| T |
45122987 |
taagtagttaatgtaggacttct |
45122965 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 34980595 - 34980546
Alignment:
| Q |
89 |
cctacaagacttgtcaagcaataaagtaaataagtggaggaatcaccttg |
138 |
Q |
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| T |
34980595 |
cctacaagacttgccaagcaagaaagtaaacaagtgaaggaatcaccttg |
34980546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 15549684 - 15549756
Alignment:
| Q |
65 |
gcacttcaagaaacaatattgtcacctacaagacttgtcaagcaataaagtaaataagtggaggaatcacctt |
137 |
Q |
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| T |
15549684 |
gcacttcaagaaacaacattgtggcctacaatacttgtcatgcaagaaaggaaacaagtgaatgaaccacctt |
15549756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 12467149 - 12467205
Alignment:
| Q |
53 |
tttgtttgttttgcacttcaagaaacaatattgtcacctacaagacttgtcaagcaa |
109 |
Q |
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||||||||| |||||||||||||||||| |||| ||||||| |||| |||||||| |
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| T |
12467149 |
tttgtttgtcttgcacttcaagaaacaagcttgtggcctacaaaacttatcaagcaa |
12467205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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