View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10817_low_1 (Length: 360)
Name: NF10817_low_1
Description: NF10817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10817_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 117 - 354
Target Start/End: Original strand, 35775493 - 35775728
Alignment:
| Q |
117 |
aattttaaaacatcttatttcacctctttaatagagggtcaggatctcacttgaggnnnnnnntcacgggagaccatcccctccccaatgtatcactgtc |
216 |
Q |
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| T |
35775493 |
aattttaaaacatcttatttcacctctttaatagagggtcaggatctcacttgaggaaaaaa-tcacgggagaccatcccctccccaatgtatcactgtc |
35775591 |
T |
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| Q |
217 |
nnnnnnngaaggaaaggctcgcaataaaaggcctagatccattacttggtccgacataacacattaaaccattgtttagtaaactcctccctcgctctca |
316 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35775592 |
aaaaaaagaaggaaaggctcgcaataaa-ggcctagatccattacttggtccgacataacacattaaaccattgtttagtaaactcctccctcgctctca |
35775690 |
T |
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| Q |
317 |
ctctttggcctttgtcgttcatcttcttcctatgcttc |
354 |
Q |
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| T |
35775691 |
ctctttggcctttgtcgttcatcttcttcttatgcttc |
35775728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 173; Significance: 6e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 7 - 354
Target Start/End: Original strand, 39500109 - 39500455
Alignment:
| Q |
7 |
ctatatatgaatacatatccaatatatcgggagaggatcatctccagtgagaaactctatagttttctgcggtcattagatctcaccattaattacactt |
106 |
Q |
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| T |
39500109 |
ctatatatgaatacatacccaatgtatcgggtgaggatcatctccagtgagaaactctttaattttctgcagtcattagatctcactattaattacattg |
39500208 |
T |
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| Q |
107 |
tccnnnnnnn-aattttaaaacatcttatttcacctctttaatagagggtcaggatctcacttgaggnnnnnnntcacgggagaccatcccctccccaat |
205 |
Q |
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| T |
39500209 |
tccttttttttaattttaaaacatcttatttcacctctttaatagaaggtcaggatctcacttgaggaaaaaa-tcacgggagaccatcccctccccaat |
39500307 |
T |
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| Q |
206 |
gtatcactgtcnnnnnnngaaggaaaggctcgcaataaaaggcctagatccattacttggtccgacataacacattaaaccattgtttagtaaactcctc |
305 |
Q |
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||| |||| || ||||||||| ||||||||||| ||| | |||||||||||||| | ||||||||||||||||||||||||||||| |||||| |
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| T |
39500308 |
gtaccactatcaaaaaaagaaggaaagactcgcaataaa-ggctttgatccattacttggccttacataacacattaaaccattgtttagtaacctcctc |
39500406 |
T |
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| Q |
306 |
cctcgctctcactctttggcctttgtcgttcatcttcttcctatgcttc |
354 |
Q |
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| T |
39500407 |
cctcgctctcactatttggcctttgtctttcatcttcttctcatgcttc |
39500455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 11211343 - 11211412
Alignment:
| Q |
35 |
gggagaggatcatctccagtgagaaactctatagttttctgcggtcattagatctcaccattaattacact |
105 |
Q |
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| T |
11211343 |
gggagaggatcctctcttgtgagaaactctc-agttttctgcggtcattaaatctcaccattaattacact |
11211412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 11278208 - 11278278
Alignment:
| Q |
35 |
gggagaggatcatctccagtgagaaactctatagttttctgcggtcattagatctcaccattaattacact |
105 |
Q |
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| T |
11278208 |
gggagaggatcctctcatgtgagaaactctcgagttttctactgtcattaaatctcaccattaattacact |
11278278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 162
Target Start/End: Complemental strand, 34040416 - 34040289
Alignment:
| Q |
36 |
ggagaggatcatctccagtgagaaactctatagttttctgcggtcattagatctcaccattaattacactttccnnnnnnn-aattttaaaacatcttat |
134 |
Q |
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|||||||||| |||||| ||| ||||||| ||||||| | |||||| |||||| ||||||||||||| || ||| ||||||||| |||| |
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| T |
34040416 |
ggagaggatcctctccaatgaaaaactctcctgttttctaccatcattaaatctcatcattaattacactatcttcttttttaatattaaaacatgttat |
34040317 |
T |
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| Q |
135 |
ttcacctctttaatagagggtcaggatc |
162 |
Q |
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| T |
34040316 |
ctcacctctttaatagatggtcaggatc |
34040289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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