View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10817_low_10 (Length: 229)

Name: NF10817_low_10
Description: NF10817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10817_low_10
NF10817_low_10
[»] chr7 (17 HSPs)
chr7 (7-229)||(22831463-22831685)
chr7 (15-229)||(22805741-22805955)
chr7 (7-218)||(22840501-22840712)
chr7 (79-229)||(22810076-22810229)
chr7 (39-229)||(22858851-22859041)
chr7 (8-229)||(22815459-22815686)
chr7 (12-219)||(22842612-22842822)
chr7 (84-229)||(22894376-22894520)
chr7 (7-168)||(22885988-22886157)
chr7 (15-229)||(22876348-22876567)
chr7 (90-229)||(22898695-22898836)
chr7 (12-123)||(22841175-22841286)
chr7 (52-218)||(22873589-22873754)
chr7 (84-229)||(22889724-22889868)
chr7 (155-218)||(22881013-22881076)
chr7 (12-86)||(22894532-22894606)
chr7 (103-139)||(22881079-22881115)
[»] chr1 (1 HSPs)
chr1 (45-229)||(21150098-21150282)


Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 22831685 - 22831463
Alignment:
Q  7 gtagctaggttcgaggatatttcttagtaggtcccaaattaggcatgcaatttttacttcactttggacaacatcttataaataataaacaccgaacaga 106  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22831685 gtagctaggttccaggacatttcttagtaggtcccaaattaggcatgcaatttttacttcactttggacaaaatcttataaataataaacaccgaacaga 22831586  T
Q  107 actacacaagtattattcattcacaaactataatcatgttcaacaaacttgtgtttatgttgttttttcttgttacattggtggcaagtaaagataaaaa 206  Q
    |||||||||| ||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||| || |||||| |||| |  |     
T  22831585 actacacaagcattattcattcacaaactataatcatgttcctcaagcttgtgtttatgttgttttttcttgttacatttgtagcaagtgaagacagcag 22831486  T
Q  207 tttcatctataatggtttccaat 229  Q
    |||||||||||||||||||||||    
T  22831485 tttcatctataatggtttccaat 22831463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 15 - 229
Target Start/End: Complemental strand, 22805955 - 22805741
Alignment:
Q  15 gttcgaggatatttcttagtaggtcccaaattaggcatgcaatttttacttcactttggacaacatcttataaataataaacaccgaacagaactacaca 114  Q
    |||| |||| |||||||| |||| |||||||||| | |||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  22805955 gttccaggacatttcttactaggacccaaattagacttgcaattttttcttcacttaggacaaaatcttataaataataaacaccgaacagaactacaca 22805856  T
Q  115 agtattattcattcacaaactataatcatgttcaacaaacttgtgtttatgttgttttttcttgttacattggtggcaagtaaagataaaaatttcatct 214  Q
    || ||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||| ||||||||| || |||||| ||||||| | ||||||||    
T  22805855 agcattattcattctcaaactataatcatgttcctcaaacttgtgtttatgttgttttttcatgttacattagtagcaagtgaagataacagtttcatct 22805756  T
Q  215 ataatggtttccaat 229  Q
    ||||||| |||||||    
T  22805755 ataatggattccaat 22805741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 7 - 218
Target Start/End: Complemental strand, 22840712 - 22840501
Alignment:
Q  7 gtagctaggttcgaggatatttcttagtaggtcccaaattaggcatgcaatttttacttcactttggacaacatcttataaataataaacaccgaacaga 106  Q
    |||||||||||| |||| ||||||||||||| |||||||||| |||| |||||||  |||||||   |||| ||||||||||||||||||||| ||||||    
T  22840712 gtagctaggttccaggacatttcttagtaggacccaaattagacatgaaatttttctttcacttaccacaaaatcttataaataataaacaccaaacaga 22840613  T
Q  107 actacacaagtattattcattcacaaactataatcatgttcaacaaacttgtgtttatgttgttttttcttgttacattggtggcaagtaaagataaaaa 206  Q
    |||||| ||| || ||| |||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||| ||||||| ||| || |     
T  22840612 actacagaagcatcatttattcacaaactataatcatgttcatcaaacttgtgttcatgttgttttttcatgttacattggtagcaagtatagacaacag 22840513  T
Q  207 tttcatctataa 218  Q
    ||||||||||||    
T  22840512 tttcatctataa 22840501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 79 - 229
Target Start/End: Complemental strand, 22810229 - 22810076
Alignment:
Q  79 atcttataaataataaacaccgaacag---aactacacaagtattattcattcacaaactataatcatgttcaacaaacttgtgtttatgttgttttttc 175  Q
    |||||||||||||||||||  ||||||   ||||||| ||| ||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||    
T  22810229 atcttataaataataaacattgaacagcagaactacagaagcattattcattcacaaactataatcatgttcctcaagcttgtgtttatgttgttttttc 22810130  T
Q  176 ttgttacattggtggcaagtaaagataaaaatttcatctataatggtttccaat 229  Q
    |||||||||| || |||||||||||||| | |||||||||||||||||||||||    
T  22810129 ttgttacattagtagcaagtaaagataacagtttcatctataatggtttccaat 22810076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 39 - 229
Target Start/End: Complemental strand, 22859041 - 22858851
Alignment:
Q  39 cccaaattaggcatgcaatttttacttcactttggacaacatcttataaataataaacaccgaacagaactacacaagtattattcattcacaaactata 138  Q
    |||||||||| |||||||||||| |||||||| | |||| ||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||| |    
T  22859041 cccaaattagacatgcaatttttccttcacttagcacaaaatcttataaataacaaacaccgaacagaactacacaagcattgttcattcacaaactaaa 22858942  T
Q  139 atcatgttcaacaaacttgtgtttatgttgttttttcttgttacattggtggcaagtaaagataaaaatttcatctataatggtttccaat 229  Q
    |||||||||  |||  |||| |||||||| | ||| |||||||||||||| |||||| |||| ||   |||||||||||| || |||||||    
T  22858941 atcatgttcctcaagtttgtctttatgttatgtttgcttgttacattggtagcaagtgaagacaacggtttcatctataaaggattccaat 22858851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 22815686 - 22815459
Alignment:
Q  8 tagctaggttcgaggatatttcttagta----ggtcccaaattaggcatgcaatttttacttcactttggacaacatcttataaataataaa-caccgaa 102  Q
    |||||| |||| |||| |||||||||||    || |||||||||| |||||||||||| |||||||| | |||| ||||||||||||| ||| || | ||    
T  22815686 tagctaagttccaggacatttcttagtacctaggacccaaattagacatgcaatttttccttcacttagcacaaaatcttataaataacaaaacatcaaa 22815587  T
Q  103 cagaactacacaagtattattcattcacaaacta-taatcatgttcaacaaacttgtgtttatgttgttttttcttgttacattggtggcaagtaaagat 201  Q
    |||||||||| ||| ||| ||||||||||||||| |||||||||||  ||||| |||||| |||||||||||||| ||||||||||| ||||||  |||     
T  22815586 cagaactacagaagcattgttcattcacaaactaataatcatgttcctcaaacatgtgttcatgttgttttttctcgttacattggtagcaagtgtagac 22815487  T
Q  202 aaaaatttcatctataatggtttccaat 229  Q
    || | |||||| |||||||| |||||||    
T  22815486 aacagtttcatatataatggattccaat 22815459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 22842822 - 22842612
Alignment:
Q  12 taggttcgaggatatttcttagtaggtcccaaattaggcatgcaattttta-cttcactttggacaacatcttataaataataaacaccgaacag---aa 107  Q
    ||||||| |||| ||||||||||||| ||||||||||   ||  ||||| | |||||||| | |||| |||||||||||||||||||  ||||||   ||    
T  22842822 taggttccaggacatttcttagtaggacccaaattagat-tggtattttcatcttcacttggcacaaaatcttataaataataaacattgaacagcagaa 22842724  T
Q  108 ctacacaagtattattcattcacaaactataatcatgttcaacaaacttgtgtttatgttgttttttcttgttacattggtggcaagtaaagataaaaat 207  Q
    ||||| ||| ||| ||||||||||||| ||||||||||||  ||| ||||||||||||||||||||||||||||||||||| |||||| |||| || | |    
T  22842723 ctacagaagcattgttcattcacaaacaataatcatgttcctcaagcttgtgtttatgttgttttttcttgttacattggtagcaagtgaagacaacagt 22842624  T
Q  208 ttcatctataat 219  Q
    ||||||||||||    
T  22842623 ttcatctataat 22842612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 84 - 229
Target Start/End: Complemental strand, 22894520 - 22894376
Alignment:
Q  84 ataaataataaacaccgaacagaactacacaagtattattcattcacaaactataatcatgttcaacaaacttgtgtttatgttgttttttcttgttaca 183  Q
    ||||||||||||||| ||||||||||  | ||| |||||| |||||||||||||||||||||||  ||  ||||||||||||||||||||||||||||||    
T  22894520 ataaataataaacactgaacagaactgtataagcattatt-attcacaaactataatcatgttcctcaggcttgtgtttatgttgttttttcttgttaca 22894422  T
Q  184 ttggtggcaagtaaagataaaaatttcatctataatggtttccaat 229  Q
    |||||  ||||| |||| |||| |||||||||||||| ||||||||    
T  22894421 ttggtaccaagtgaagacaaaagtttcatctataatgatttccaat 22894376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 168
Target Start/End: Complemental strand, 22886157 - 22885988
Alignment:
Q  7 gtagctaggttcgaggatatttcttagtaggtcccaaattaggcatgcaatttttacttcactttggacaacatcttataaataataaacaccg------ 100  Q
    |||||||||||| |||| ||||||||||||| ||| |||||| |||||||||||| |||||||| | |||| ||||||||||||||||||||||          
T  22886157 gtagctaggttctaggaaatttcttagtaggacccgaattagacatgcaatttttccttcacttagcacaaaatcttataaataataaacaccgaacact 22886058  T
Q  101 --aacagaactacacaagtattattcattcacaaactataatcatgttcaacaaacttgtgtttatgttg 168  Q
      |||||||||||| ||| || |||||||| ||||||||||||||||||  || ||||||||| ||||||    
T  22886057 cgaacagaactacagaagcatgattcattctcaaactataatcatgttcctcagacttgtgttcatgttg 22885988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 229
Target Start/End: Complemental strand, 22876567 - 22876348
Alignment:
Q  15 gttcgaggatatttcttagtaggtcccaaattaggcatgcaatttttacttcactttggacaacatctt------ataaataataaacaccgaacagaac 108  Q
    |||| |||| |||||||||||||  ||||||||| | |||||||||| |||||||| |||||| || |       ||||||||||||||   ||||||||    
T  22876567 gttccaggacatttcttagtaggatccaaattagacttgcaattttttcttcacttaggacaaaatatataaataataaataataaacaatcaacagaac 22876468  T
Q  109 tacacaagtattattcattcacaaactataatcatgttcaacaaacttgtgtttatgttgttttttcttgttacattggtggcaagtaaagataaaaatt 208  Q
    | || ||| |||||| || ||||||||||||||||||||  ||  |||||||| |||||||||| ||||||||||||||| |||||| |||| || | ||    
T  22876467 tgcataagcattatt-atccacaaactataatcatgttcttcaggcttgtgttcatgttgttttatcttgttacattggtagcaagtgaagaaaacagtt 22876369  T
Q  209 tcatctataatggtttccaat 229  Q
    ||||||||||||| |||||||    
T  22876368 tcatctataatggattccaat 22876348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 90 - 229
Target Start/End: Complemental strand, 22898836 - 22898695
Alignment:
Q  90 aataaacaccgaacagaactacacaagtattattcattcacaaacta---taatcatgttcaacaaacttgtgtttatgttgttttttcttgttacattg 186  Q
    |||||||||  |||||||||||| ||  |||||| ||||||||||||   |||||||||||  ||| |||| ||| ||||||||||||| ||||||||||    
T  22898836 aataaacactaaacagaactacagaatcattatt-attcacaaactactataatcatgttcctcaagcttgcgttcatgttgttttttcatgttacattg 22898738  T
Q  187 gtggcaagtaaagataaaaatttcatctataatggtttccaat 229  Q
    || |||||||||||||| | |||||||||||||||||||||||    
T  22898737 gtagcaagtaaagataacagtttcatctataatggtttccaat 22898695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 22841286 - 22841175
Alignment:
Q  12 taggttcgaggatatttcttagtaggtcccaaattaggcatgcaatttttacttcactttggacaacatcttataaataataaacaccgaacagaactac 111  Q
    ||||||| |||| ||||||||||||| ||||||| || | |||||||||| ||||||||||||||| |||||||||||||||||||| ||||| |||| |    
T  22841286 taggttccaggacatttcttagtaggacccaaataagacttgcaattttttcttcactttggacaaaatcttataaataataaacactgaacataactgc 22841187  T
Q  112 acaagtattatt 123  Q
    | ||| ||||||    
T  22841186 ataagaattatt 22841175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 218
Target Start/End: Complemental strand, 22873754 - 22873589
Alignment:
Q  52 tgcaatttttacttcactttggacaacatcttataaataataaacaccgaacagaactacacaagtattattcattcacaaactataatcatgttcaaca 151  Q
    ||||| |||| |||||||| |||||| ||| |||||||||||||||| ||| |||||| || ||| |||||| |||||||| | ||||||||||||  ||    
T  22873754 tgcaaatttttcttcacttaggacaaaatcatataaataataaacactgaatagaactgcataagcattatt-attcacaatccataatcatgttcctca 22873656  T
Q  152 aacttgtgtttatgttgttttttcttgttacattggtggcaagtaaagataaaaatttcatctataa 218  Q
      |||||| | |||||||||| |||||||||||| || |||||| |||| || | ||||||||||||    
T  22873655 ggcttgtgctcatgttgttttatcttgttacattagtagcaagtgaagacaacagtttcatctataa 22873589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 84 - 229
Target Start/End: Complemental strand, 22889868 - 22889724
Alignment:
Q  84 ataaataataaacaccgaacagaactacacaagtattattcattcacaaactataatcatgttcaacaaacttgtgtttatgttgttttttcttgttaca 183  Q
    |||||||| |||||  |||| |||||  | ||| |||||| |||||||| ||||||||||||||  || || |||||| ||||||||||||| |||||||    
T  22889868 ataaataagaaacaatgaaccgaactgtataagcattatt-attcacaacctataatcatgttcctcagacatgtgttcatgttgttttttcatgttaca 22889770  T
Q  184 ttggtggcaagtaaagataaaaatttcatctataatggtttccaat 229  Q
    ||||| |||||| |||| || | |||||| |||||||| |||||||    
T  22889769 ttggttgcaagtgaagacaacagtttcatatataatggattccaat 22889724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 22881076 - 22881013
Alignment:
Q  155 ttgtgtttatgttgttttttcttgttacattggtggcaagtaaagataaaaatttcatctataa 218  Q
    |||||||||||||||||||||||||||||||| | |||||| |||| || | ||||||||||||    
T  22881076 ttgtgtttatgttgttttttcttgttacattgatagcaagtgaagaaaacagtttcatctataa 22881013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 22894606 - 22894532
Alignment:
Q  12 taggttcgaggatatttcttagtaggtcccaaattaggcatgcaatttttacttcactttggacaacatcttata 86  Q
    ||||||| | || ||||||||||||| |||||||||| | |||||||||| |||||| | |||||| ||||||||    
T  22894606 taggttccaagacatttcttagtaggacccaaattagacttgcaattttttcttcacctaggacaaaatcttata 22894532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 22881115 - 22881079
Alignment:
Q  103 cagaactacacaagtattattcattcacaaactataa 139  Q
    |||||||||| ||||||||||||||||||||||||||    
T  22881115 cagaactacagaagtattattcattcacaaactataa 22881079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 45 - 229
Target Start/End: Original strand, 21150098 - 21150282
Alignment:
Q  45 ttaggcatgcaatttttacttcactttggacaacatcttataaataataaacaccgaacagaactacacaagtattattcattcacaaactataatcatg 144  Q
    |||| |||||||||||| |||||||| | |||| ||||||||||||||||||| | |||||||||||| ||| ||| |||||||||||||||||||||||    
T  21150098 ttagacatgcaatttttccttcacttagcacaaaatcttataaataataaacatcaaacagaactacagaagcattgttcattcacaaactataatcatg 21150197  T
Q  145 ttcaacaaacttgtgtttatgttgttttttcttgttacattggtggcaagtaaagataaaaatttcatctataatggtttccaat 229  Q
    |||  ||| ||||||||||||||||||  ||||||||||||||| |||||| ||||||| | ||||||||||||||| |||||||    
T  21150198 ttcctcaagcttgtgtttatgttgtttaatcttgttacattggtagcaagtgaagataacagtttcatctataatggattccaat 21150282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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