View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10817_low_11 (Length: 227)
Name: NF10817_low_11
Description: NF10817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10817_low_11 |
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| [»] chr2 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 9935184 - 9935410
Alignment:
| Q |
1 |
ttggaaggtcttaatagagttttggagagtaaaggaatcaaggggaaacttgattttgaggcatggagacaggagttgaatgtgcagaagctgaaatttc |
100 |
Q |
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| T |
9935184 |
ttggaaggtcttaatagagttttggagagtaaaggaatcaaggggaaacttgattttgaggcatggagacaggagttgaatgtgcagaagctgaaatttc |
9935283 |
T |
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| Q |
101 |
ctcttgcttttaagagatttgagaatgccatttcgcctcaatatgcaattaagatgcttgaagagttaactaatggtgatgctattgttactactggtgt |
200 |
Q |
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| T |
9935284 |
ctcttgcttttaagagatttgagaatgccatttcgcctcaatatgcaattaagatgcttgaagagttaactaatggtgatgctattgttactactggtgt |
9935383 |
T |
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| Q |
201 |
tggacaacatcaaatgtgggctgctca |
227 |
Q |
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| T |
9935384 |
tggacaacatcaaatgtgggctgctca |
9935410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 227
Target Start/End: Original strand, 3472799 - 3472834
Alignment:
| Q |
192 |
tactggtgttggacaacatcaaatgtgggctgctca |
227 |
Q |
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| T |
3472799 |
tactggtgttggacaacatcagatgtgggctgctca |
3472834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 45477130 - 45477356
Alignment:
| Q |
1 |
ttggaaggtcttaatagagttttggagagtaaaggaatcaaggggaaacttgattttgaggcatggagacaggagttgaatgtgcagaagctgaaatttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| | ||||||| |
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| T |
45477130 |
ttggaaggtcttaatagagttttggagagtaaaggaatcaaggggaagcttgattttgaggcatggaggcaggagttgaatgtgcagaagttaaaatttc |
45477229 |
T |
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| Q |
101 |
ctcttgcttttaagagatttgagaatgccatttcgcctcaatatgcaattaagatgcttgaagagttaactaatggtgatgctattgttactactggtgt |
200 |
Q |
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|||||| |||||||| ||||||| |||| ||||||||||| ||||| ||| || ||||||| ||||| || |||||||| |||||||||| ||||||||| |
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| T |
45477230 |
ctcttggttttaagacatttgaggatgctatttcgcctcagtatgctattcaggtgcttgatgagttgacgaatggtgacgctattgttagtactggtgt |
45477329 |
T |
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| Q |
201 |
tggacaacatcaaatgtgggctgctca |
227 |
Q |
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|||||| |||||||||||| ||||||| |
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| T |
45477330 |
tggacagcatcaaatgtggtctgctca |
45477356 |
T |
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