View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10817_low_2 (Length: 354)
Name: NF10817_low_2
Description: NF10817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10817_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 341
Target Start/End: Original strand, 30021298 - 30021620
Alignment:
| Q |
19 |
acggaacacttcattccaagacgatccagtgcaagatgaagctcttccgtcgaaatgagcccgtttttatctttatcgtacagatcgaacgcatcacgaa |
118 |
Q |
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| T |
30021298 |
acggaacacttcattccaagacgatccagtgcaagatgaagctcttccgtcgaaatgagcccgtttttatctttatcgtacagatcgaacgcatcacgaa |
30021397 |
T |
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| Q |
119 |
gagctgaatcgccgccgtcggtggtgtcggagcggcagaacgcggcgaattcagataagttgatgaaaccgtcgtggtcagtgctgagttcttccatgac |
218 |
Q |
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| T |
30021398 |
gagctgaatcgccgccgtcggtggtgtcggagcggcagaacgcggcgaattcagataagttgatgaaaccgtcgcggtcagtgctgagttcttccatgac |
30021497 |
T |
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| Q |
219 |
gcgtcggagttcttcttgttgtggtacgtcggatctgagtgttcggagtacggtttcgagttcgttgacggagatcttgccgtcgccgtttgcgtcgaag |
318 |
Q |
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| T |
30021498 |
gcgtcggagttcttcttgttgtggtacgtcggatctgagtgttcggagtacggtttcgagttcgttgacggagatcttgccgtcgccgtttgcgtcgaag |
30021597 |
T |
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| Q |
319 |
ttgttgaagacttttttgagttc |
341 |
Q |
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| T |
30021598 |
ttgttgaagacttttttgagttc |
30021620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 45257562 - 45257647
Alignment:
| Q |
133 |
ccgtcggtggtgtcggagcggcagaacgcggcgaattcagataagttgatgaaaccgtcgtggtcagtgctgagttcttccatgac |
218 |
Q |
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| T |
45257562 |
ccgtcggcggagccggagcggcagaaggcggcgaactcagcgaggttgatgaaaccgtcgcggtcggtgtcaaggtcttccatgac |
45257647 |
T |
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