View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10817_low_4 (Length: 308)
Name: NF10817_low_4
Description: NF10817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10817_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 20 - 295
Target Start/End: Original strand, 9935423 - 9935698
Alignment:
| Q |
20 |
caagagacataggcagtggttaacttccggtggacttggtgctatgggtttcggattacctgctgcaattggtgccgcaattgctaaccctaatgccatc |
119 |
Q |
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| T |
9935423 |
caagagacctaggcagtggttaacttctggtggacttggtgcaatgggtttcggattacctgctgcaattggtgccgcaattgctaaccctaatgccatc |
9935522 |
T |
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| Q |
120 |
gttgttgacattgacggagatggtagttttttgatgaatgttcaagagttagctactataagagcggaaaatattccggtgaagataatgttgttgaata |
219 |
Q |
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| T |
9935523 |
gttgttgacattgacggagatggtagttttttgatgaatgttcaagagttagctactataagagcggaaaatattccggtgaagataatgttgttgaata |
9935622 |
T |
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| Q |
220 |
atcaacatttgggaatggttgttcaacgggaagatagattctaccggtcaaatagaggtcatacttatcttggaga |
295 |
Q |
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| T |
9935623 |
atcaacatttgggaatggttgttcaacgggaagatagattctaccggtcaaatagaggtcatacttatcttggaga |
9935698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 208 - 295
Target Start/End: Original strand, 9924712 - 9924799
Alignment:
| Q |
208 |
tgttgttgaataatcaacatttgggaatggttgttcaacgggaagatagattctaccggtcaaatagaggtcatacttatcttggaga |
295 |
Q |
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| T |
9924712 |
tgttgttgaataattaacatttgggaatggttactcagtgggaggatagattctaccagtccaacaaaggtcatacttatcttggaga |
9924799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 241
Target Start/End: Original strand, 3472950 - 3473068
Alignment:
| Q |
123 |
gttgacattgacggagatggtagttttttgatgaatgttcaagagttagctactataagagcggaaaatattccggtgaagataatgttgttgaataatc |
222 |
Q |
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| T |
3472950 |
gttgacatcgatggtgatggaagttttatgatgaatgttcaggaattggctactatcaaggtggagaatctccctgttaagatattgttgttgaataatc |
3473049 |
T |
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| Q |
223 |
aacatttgggaatggttgt |
241 |
Q |
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| T |
3473050 |
aacacttgggtatggttgt |
3473068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 21 - 292
Target Start/End: Original strand, 45477370 - 45477641
Alignment:
| Q |
21 |
aagagacataggcagtggttaacttccggtggacttggtgctatgggtttcggattacctgctgcaattggtgccgcaattgctaaccctaatgccatcg |
120 |
Q |
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| T |
45477370 |
aagagacctaggcagtggttaacttctggtggacttggtgccatgggttttggattacctgctgctatcggtgctgctgttgctaaccctgatgcaattg |
45477469 |
T |
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| Q |
121 |
ttgttgacattgacggagatggtagttttttgatgaatgttcaagagttagctactataagagcggaaaatattccggtgaagataatgttgttgaataa |
220 |
Q |
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| T |
45477470 |
tcgttgatattgacggggatggtagttttatgatgaacgttcaagagttagctactataagagtagagaatcttccggttaagatcctgttgttgaataa |
45477569 |
T |
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| Q |
221 |
tcaacatttgggaatggttgttcaacgggaagatagattctaccggtcaaatagaggtcatacttatcttgg |
292 |
Q |
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|||||||||||| |||||||||||| |||| |||||||||||| | ||||||||| ||||||||||||||| |
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| T |
45477570 |
tcaacatttgggtatggttgttcaatgggaggatagattctacaaggcaaatagagctcatacttatcttgg |
45477641 |
T |
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