View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10817_low_6 (Length: 251)
Name: NF10817_low_6
Description: NF10817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10817_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 114 - 246
Target Start/End: Complemental strand, 52858197 - 52858065
Alignment:
| Q |
114 |
caatgagacacttggatggttatgaatggtgacaaattaccacctgtacaaacaactatcactctgctttgttcagttccactaactcaatcactctctt |
213 |
Q |
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| T |
52858197 |
caatgagacacttggatggttatgaatggtgacaaattaccacttgtacaaacaactatcactctgctttgttcagttccactaactcaatcactctctc |
52858098 |
T |
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| Q |
214 |
tctctattctcttccttcccaattcatctcact |
246 |
Q |
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| T |
52858097 |
tctctattctcttccttcccaattcatctcact |
52858065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 52858314 - 52858252
Alignment:
| Q |
1 |
aattttgtttattcaattttaaaatcaaaattccaaaatttttgctagtattataaattatca |
63 |
Q |
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| T |
52858314 |
aattttgtttattcaattttaaaatcaaaattccaaaatttttgctagtattataaattatca |
52858252 |
T |
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