View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10818_high_13 (Length: 321)
Name: NF10818_high_13
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10818_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 6 - 304
Target Start/End: Complemental strand, 39100217 - 39099939
Alignment:
| Q |
6 |
tttgtatgtgtatatgtcgtttatgtaatgtaataattaatgcaataaaagaagagcagcaacaaatgtatgaagaaggctttcaatcaaagaaataann |
105 |
Q |
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| T |
39100217 |
tttgtatgtgtatatgtcgtttatgtaatgtaataattaatgcagtaaaagaagagcagcaacaaatgtatgaagaaggctttcaatcaaagaaataatg |
39100118 |
T |
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| Q |
106 |
nnnnnnnnnnnnnnnatagagtatatttatacttattgataaatataaatgataacaacaatagttagagctgacctcctttnnnnnnnnnnnnnnnnnn |
205 |
Q |
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| T |
39100117 |
tgtgt----------atagagtatatttatacttgttgataaatataaatgataacaacaatagttagagatgacctcctttaaaaaaaa---------- |
39100038 |
T |
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| Q |
206 |
ttagagctgacccaaggggctgcaaatgaggcagcagccataatctcaaatatttttagcctcaaacttattatatatacttttcatttagttaatact |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39100037 |
ttagagctgacccaaggggctgcaaatgaggcagcagccataatctcaaatatttttagcctcaaacttattatatatacttttcatttagttaatact |
39099939 |
T |
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