View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10818_high_2 (Length: 506)

Name: NF10818_high_2
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10818_high_2
NF10818_high_2
[»] chr5 (2 HSPs)
chr5 (1-488)||(29526336-29526823)
chr5 (31-451)||(39701943-39702372)
[»] chr7 (7 HSPs)
chr7 (1-488)||(6081842-6082329)
chr7 (362-457)||(13078342-13078437)
chr7 (356-450)||(101463-101557)
chr7 (1-55)||(15432497-15432551)
chr7 (1-55)||(15490850-15490904)
chr7 (1-55)||(15567516-15567570)
chr7 (392-456)||(32169741-32169805)
[»] chr1 (4 HSPs)
chr1 (1-488)||(10583341-10583827)
chr1 (162-488)||(49122859-49123183)
chr1 (1-90)||(49122769-49122858)
chr1 (401-457)||(23541320-23541376)
[»] chr6 (1 HSPs)
chr6 (1-488)||(18132074-18132561)
[»] scaffold0227 (2 HSPs)
scaffold0227 (1-213)||(11717-11929)
scaffold0227 (269-488)||(11928-12146)
[»] chr3 (3 HSPs)
chr3 (384-488)||(35389066-35389170)
chr3 (362-457)||(39984047-39984142)
chr3 (392-457)||(2386598-2386663)
[»] chr2 (3 HSPs)
chr2 (362-457)||(14685368-14685463)
chr2 (362-457)||(40422192-40422287)
chr2 (362-457)||(21307224-21307315)
[»] scaffold0026 (1 HSPs)
scaffold0026 (392-488)||(80522-80618)
[»] chr4 (3 HSPs)
chr4 (389-456)||(54641251-54641318)
chr4 (362-457)||(54938073-54938167)
chr4 (389-433)||(54641614-54641658)
[»] scaffold1195 (1 HSPs)
scaffold1195 (1-55)||(626-680)


Alignment Details
Target: chr5 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Complemental strand, 29526823 - 29526336
Alignment:
Q  1 aaaggtagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagaccaaagcagatctgtgcaaattt 100  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29526823 aaaggtagagaatgcagaagaaagggatgcggaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagaccaaagcagatctgcgcaaattt 29526724  T
Q  101 cttggtatcgacagactcttttatgaacatggtatgggtagtgtgtccgaatcgagggagaaattgcctagaaaaactatcggagagggatgggtttcac 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29526723 cttggtatcgacagactcttttatgaacatggtatgagtagtgtgttcgaatcgagggcgaaattgcctagaaaaactatcggagagggatgggtttcac 29526624  T
Q  201 tcgagttgggcggcctacctccaccaccgccaaagccgctagatccagatgtgtttgtggtgaagggtggattatcctctggtttgatcgaactggcact 300  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29526623 tcgagttgggcggcctacctccaccgccgccaaagccgccagatccagacgtgtttgtggtgaagggtggattatcctctggtttgatcgaactggcact 29526524  T
Q  301 gtgcctattgctgccaaaaattcctccccagaagagagtgtctgatgcatgcattagttatcatgtttcacaccttgctctgacactctacttcaagtta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29526523 gtgcctattgctgccaaaaattcctccccagaagagagtgtctgatgcatgcattagttatcatgtttcacaccttgctctgacactctacttcaagtta 29526424  T
Q  401 tgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatctttannnnnnnagtattgttagtaataggactcct 488  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  29526423 tgggaccctggtggacacttatgtcatccttcaccttgaggacaaggtgaatctttagggggggagtattgttagtaataggactcct 29526336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 31 - 451
Target Start/End: Complemental strand, 39702372 - 39701943
Alignment:
Q  31 agaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagaccaaagcagatctgtgcaaatttcttggtatcgacagactcttttatgaacat 130  Q
    ||||| |||||| ||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||| ||| ||| ||| ||||||||    
T  39702372 agaaagttcctctgtgaatgtcatcaatgtggaaaagcaacaagagaccaaagtagatttgtgcaaatttcttggtatcaacaaactatttgatgaacat 39702273  T
Q  131 ggtatgggtagtgtgtccgaatcgagggagaaattgcctagaaaaactatcggagagggatgggtttcactcgagttgggcggcctacctccaccaccgc 230  Q
    ||  || ||| ||||| ||||| ||||| |  ||||||||||| ||||| ||||||||||||||||||||| ||||||| ||||||   |||| ||||||    
T  39702272 ggcgtgagtattgtgttcgaattgagggtgggattgcctagaacaactaccggagagggatgggtttcacttgagttggacggcct---tccagcaccgc 39702176  T
Q  231 caaagccgctagatccagatgtgtttgtggtgaagggtggattatcctctggtttgatcgaactggcactgtgcctattgctgc---------------c 315  Q
    |   | | | ||||||| | | ||||| ||||||||||||||| |||||||||||||| ||||||||||| | | |||||||||               |    
T  39702175 c---gtcaccagatccaaacgcgtttgcggtgaagggtggattgtcctctggtttgattgaactggcactattcttattgctgccactttcttttggatc 39702079  T
Q  316 aaaaattcctccccagaagagagtgtctgatgcatgcattagttatcatgtttcacaccttgctctgacactctacttcaagttatgggaccctggtgga 415  Q
    |||||| || ||||| || ||||||| |||| |||||||||||||||| ||||||| |||||||||| || | ||||||||||| |||||||||||||||    
T  39702078 aaaaataccaccccaaaatagagtgtttgatccatgcattagttatcaggtttcacgccttgctctgtcattgtacttcaagttttgggaccctggtgga 39701979  T
Q  416 cacttatgttatccttcaccttgaggacaaggtgaa 451  Q
    ||||||| ||||||||||||||||||||||||||||    
T  39701978 cacttatattatccttcaccttgaggacaaggtgaa 39701943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 6081842 - 6082329
Alignment:
Q  1 aaaggtagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagaccaaagcagatctgtgcaaattt 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6081842 aaaggcagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagaccaaagcagatctgcgcaaattt 6081941  T
Q  101 cttggtatcgacagactcttttatgaacatggtatgggtagtgtgtccgaatcgagggagaaattgcctagaaaaactatcggagagggatgggtttcac 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6081942 cttggtatcgacagactcttttatgaacatggtatgagtagtgtgttcgaatcgagggcgaaattgcctagaaaaactatcggagagggatgggtttcac 6082041  T
Q  201 tcgagttgggcggcctacctccaccaccgccaaagccgctagatccagatgtgtttgtggtgaagggtggattatcctctggtttgatcgaactggcact 300  Q
    ||||||||||||||||||||||||| ||||||| ||| | ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6082042 tcgagttgggcggcctacctccaccgccgccaaggcccccagatccagacgtgtttgtggtgaagggtggattatcctctggtttgatcaaactggcact 6082141  T
Q  301 gtgcctattgctgccaaaaattcctccccagaagagagtgtctgatgcatgcattagttatcatgtttcacaccttgctctgacactctacttcaagtta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6082142 gtgcctattgctgccaaaaattcctccccagaagagagtgtctgatgtatgcattagttatcatgtttcacaccttgctctgtcactctacttcaagtta 6082241  T
Q  401 tgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatctttannnnnnnagtattgttagtaataggactcct 488  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  6082242 tgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatctttagggggggagtattgttagtaataggactcct 6082329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 362 - 457
Target Start/End: Original strand, 13078342 - 13078437
Alignment:
Q  362 catgtttcacaccttgctctgacactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttta 457  Q
    |||| |||||||  ||||||| || | |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  13078342 catgattcacacagtgctctgtcattatacttcaagttatgggacccaggtggacacttatgatatccttcaccttgaggacaaggtgaatcttta 13078437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 356 - 450
Target Start/End: Original strand, 101463 - 101557
Alignment:
Q  356 agttatcatgtttcacaccttgctctgacactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtga 450  Q
    |||| ||||||||||||| ||| |||  || |||| || ||||||||||||||  ||||||| |||| | ||||||||||||||| |||||||||    
T  101463 agttctcatgtttcacacattgttctaccattctatttgaagttatgggacccaagtggacatttatataatccttcaccttgagtacaaggtga 101557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 15432497 - 15432551
Alignment:
Q  1 aaaggtagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatc 55  Q
    ||||| |||||| ||| ||||||||||||||||||||||||| ||||||||||||    
T  15432497 aaaggcagagaatgcataagaaagggatgcagaaaattcctctgtgaatgtcatc 15432551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 15490850 - 15490904
Alignment:
Q  1 aaaggtagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatc 55  Q
    |||||||||||| ||| ||||||||||||||||||| ||||| ||||||||||||    
T  15490850 aaaggtagagaatgcataagaaagggatgcagaaaaatcctctgtgaatgtcatc 15490904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 15567516 - 15567570
Alignment:
Q  1 aaaggtagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatc 55  Q
    |||||||||||| ||| || |||||||||||||||||||||| ||||||| ||||    
T  15567516 aaaggtagagaatgcataataaagggatgcagaaaattcctctgtgaatgccatc 15567570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 456
Target Start/End: Complemental strand, 32169805 - 32169741
Alignment:
Q  392 ttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttt 456  Q
    ||||| ||| || ||||| |||||||||  ||| ||| |||||||||||||||||||||| ||||    
T  32169805 ttcaaattacggaaccctagtggacactattgtaatcattcaccttgaggacaaggtgaaacttt 32169741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 10583341 - 10583827
Alignment:
Q  1 aaaggtagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagaccaaagcagatctgtgcaaattt 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10583341 aaaggcagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagaccaaagcagatctgcgcaaattt 10583440  T
Q  101 cttggtatcgacagactcttttatgaacatggtatgggtagtgtgtccgaatcgagggagaaattgcctagaaaaactatcggagagggatgggtttcac 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||     |||||||||||||||||||||||||||||||||||||    
T  10583441 cttggtatcgacagactcttttatgaacatggtatgagtagtgtgttcgaatcgagggcttc-ttgcctagaaaaactatcggagagggatgggtttcac 10583539  T
Q  201 tcgagttgggcggcctacctccaccaccgccaaagccgctagatccagatgtgtttgtggtgaagggtggattatcctctggtttgatcgaactggcact 300  Q
    ||||||||||||||||||||||||| ||||||| ||| | ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10583540 tcgagttgggcggcctacctccaccgccgccaaggcccccagatccagacgtgtttgtggtgaagggtggattatcctctggtttgatcaaactggcact 10583639  T
Q  301 gtgcctattgctgccaaaaattcctccccagaagagagtgtctgatgcatgcattagttatcatgtttcacaccttgctctgacactctacttcaagtta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10583640 gtgcctattgctgccaaaaattcctccccagaagagagtgtctgatgtatgcattagttatcatgtttcacaccttgctctgtcactctacttcaagtta 10583739  T
Q  401 tgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatctttannnnnnnagtattgttagtaataggactcct 488  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  10583740 tgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatctttagggggggagtattgttagtaataggactcct 10583827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 162 - 488
Target Start/End: Original strand, 49122859 - 49123183
Alignment:
Q  162 aattgcctagaaaaactatcggagagggatgggtttcactcgagttgggcggcctacctccaccaccgccaaagccgctagatccagatgtgtttgtggt 261  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||| |||||||||||    
T  49122859 aattgcctagaaaaactatcgaagagggatgggtttcactcgagttgggcggcctacctccaccgccgccaaggccgccagatccagacgtgtttgtggt 49122958  T
Q  262 gaagggtggattatcctctggtttgatcgaactggcactgtgcctattgctgccaaaaattcctccccagaagagagtgtctgatgcatgcattagttat 361  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||    
T  49122959 gaagggtggattatcctctggtttgatcaaactggcactgtgcctattgctgccaaaaattcctccccaga--agagtgtctgatgtatgcattagttat 49123056  T
Q  362 catgtttcacaccttgctctgacactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatctttannnn 461  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  49123057 catgtttcacaccttgctctgtcactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatctttagggg 49123156  T
Q  462 nnnagtattgttagtaataggactcct 488  Q
       ||||||||||||||||||||||||    
T  49123157 gggagtattgttagtaataggactcct 49123183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 49122769 - 49122858
Alignment:
Q  1 aaaggtagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagaccaaagcagatct 90  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  49122769 aaaggcagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagaccaaagtagatct 49122858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 401 - 457
Target Start/End: Complemental strand, 23541376 - 23541320
Alignment:
Q  401 tgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttta 457  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  23541376 tgggaccctggtggacacttatgttatcctttaccttgaggacaacgtgaatcttta 23541320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Complemental strand, 18132561 - 18132074
Alignment:
Q  1 aaaggtagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagaccaaagcagatctgtgcaaattt 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  18132561 aaaggtagagaacacagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagaccaaagcagatcagcgcaaattt 18132462  T
Q  101 cttggtatcgacagactcttttatgaacatggtatgggtagtgtgtccgaatcgagggagaaattgcctagaaaaactatcggagagggatgggtttcac 200  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  18132461 cttggtatcgacagacttttttatgaacatggtatgagtagtgtgttcgaatcgatggcgaaattgcctagaaaaactatcggagagggatgggtttcac 18132362  T
Q  201 tcgagttgggcggcctacctccaccaccgccaaagccgctagatccagatgtgtttgtggtgaagggtggattatcctctggtttgatcgaactggcact 300  Q
    |||||||||||||| |||||||||  | ||||||||| | ||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  18132361 tcgagttgggcggcttacctccacggctgccaaagccaccagatccagacgtgtttgtggtgaagggtggatgatcctttggtttgatcgaactggcact 18132262  T
Q  301 gtgcctattgctgccaaaaattcctccccagaagagagtgtctgatgcatgcattagttatcatgtttcacaccttgctctgacactctacttcaagtta 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18132261 gtgcctattgctgccaaaaattcctccccagaagagagtgtctgatgcatgcattagttatcatgtttcacaccttgctctgtcactctacttcaagtta 18132162  T
Q  401 tgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatctttannnnnnnagtattgttagtaataggactcct 488  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  18132161 tgggaccctggtggacacttattttatccttcaccttgaggacaaggtgaatctttagggggggagtattgttagtaataggactcct 18132074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 193; Significance: 1e-104; HSPs: 2)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 11717 - 11929
Alignment:
Q  1 aaaggtagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagaccaaagcagatctgtgcaaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11717 aaaggtagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagaccaaagcagatctgcgcaaattt 11816  T
Q  101 cttggtatcgacagactcttttatgaacatggtatgggtagtgtgtccgaatcgagggagaaattgcctagaaaaactatcggagagggatgggtttcac 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  11817 cttggtatcgacagactcttttatgaacatggtatgagtagtgtgttcgaatcgagggcaaaattgcctagaaaaactatcggagagggatgggtttcac 11916  T
Q  201 tcgagttgggcgg 213  Q
    |||||||||||||    
T  11917 tcgagttgggcgg 11929  T

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Target: scaffold0227; HSP #2
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 269 - 488
Target Start/End: Original strand, 11928 - 12146
Alignment:
Q  269 ggattatcctctggtttgatcgaactggcactgtgcctattgctgccaaaaattcctccccagaagagagtgtctgatgcatgcattagttatcatgttt 368  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11928 ggattatcctctggtttgatcgaactggcactgtgcctattgctgccaaaaattcctccccagaagagagtg-ctgatgcatgcattagttatcatgttt 12026  T
Q  369 cacaccttgctctgacactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatctttannnnnnnagta 468  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |       ||||    
T  12027 cacaccttgctctgtcactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttaagggggggagta 12126  T
Q  469 ttgttagtaataggactcct 488  Q
    ||||||||||||||||||||    
T  12127 ttgttagtaataggactcct 12146  T

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Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 384 - 488
Target Start/End: Original strand, 35389066 - 35389170
Alignment:
Q  384 cactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatctttannnnnnnagtattgttagtaatagga 483  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||       |||||||||||  ||||||    
T  35389066 cactctacttcaagttatgggatcctggtggacacttatgttatccttcaacttgaggacaaggtgaatctttagggggggagtattgttagatatagga 35389165  T
Q  484 ctcct 488  Q
    |||||    
T  35389166 ctcct 35389170  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 362 - 457
Target Start/End: Complemental strand, 39984142 - 39984047
Alignment:
Q  362 catgtttcacaccttgctctgacactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttta 457  Q
    |||| |||||||  ||||||| || | |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  39984142 catgattcacacagtgctctgtcattatacttcaagttatgggacccaggtggacacttatgatatccttcaccttgaggacaaggtgaatcttta 39984047  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 392 - 457
Target Start/End: Complemental strand, 2386663 - 2386598
Alignment:
Q  392 ttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttta 457  Q
    ||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2386663 ttcaacttatgggactctggtggacacttatgctatccttcaccttgaggacaaggtgaatcttta 2386598  T

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Target: chr2 (Bit Score: 64; Significance: 9e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 362 - 457
Target Start/End: Original strand, 14685368 - 14685463
Alignment:
Q  362 catgtttcacaccttgctctgacactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttta 457  Q
    |||| |||||||  ||||||| || | |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  14685368 catgattcacacagtgctctgtcattatacttcaagttatgggacccaggtggacacttatgatatccttcaccttgaggacaaggtgaatcttta 14685463  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 362 - 457
Target Start/End: Original strand, 40422192 - 40422287
Alignment:
Q  362 catgtttcacaccttgctctgacactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttta 457  Q
    |||| |||||||  ||||||| || | |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  40422192 catgattcacacagtgctctgtcattatacttcaagttatgggacccaggtggacacttatgatatccttcaccttgaggacaaggtgaatcttta 40422287  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 362 - 457
Target Start/End: Original strand, 21307224 - 21307315
Alignment:
Q  362 catgtttcacaccttgctctgacactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttta 457  Q
    |||| |||||||  ||||||| || | |||||||||||||||||||| |||||||||||||    |||||||||||||||||||||||||||||||    
T  21307224 catgattcacacagtgctctgtcattatacttcaagttatgggacccaggtggacacttat----tccttcaccttgaggacaaggtgaatcttta 21307315  T

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Target: scaffold0026 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 392 - 488
Target Start/End: Original strand, 80522 - 80618
Alignment:
Q  392 ttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatctttannnnnnnagtattgttagtaataggactcct 488  Q
    |||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||       |||||||||||  |||||||||||    
T  80522 ttcaagttatgggaccatggtggacacttatcttgtccttcaccttgaggacaaggtgaatctttagggggggagtattgttagatataggactcct 80618  T

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Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 389 - 456
Target Start/End: Complemental strand, 54641318 - 54641251
Alignment:
Q  389 tacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttt 456  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||    
T  54641318 tacttcaagttatgggaccctggtggacacttctgttatccctcaccttgaggacaaggtgattcttt 54641251  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 362 - 457
Target Start/End: Complemental strand, 54938167 - 54938073
Alignment:
Q  362 catgtttcacaccttgctctgacactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttta 457  Q
    |||| ||||||| | |||||| || | ||||||| |||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||    
T  54938167 catgattcacacatcgctctgtcattatacttca-gttatgggacccaggtggacacttatgatatccttcaccttgaggataaggtgaatcttta 54938073  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 433
Target Start/End: Complemental strand, 54641658 - 54641614
Alignment:
Q  389 tacttcaagttatgggaccctggtggacacttatgttatccttca 433  Q
    |||||||||||||||||||||||||||||||| |||||| |||||    
T  54641658 tacttcaagttatgggaccctggtggacacttttgttatacttca 54641614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1195 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold1195
Description:

Target: scaffold1195; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 626 - 680
Alignment:
Q  1 aaaggtagagaacgcagaagaaagggatgcagaaaattcctccgtgaatgtcatc 55  Q
    |||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||    
T  626 aaaggtagagaatgcataagaaagggatgcagaaaattcctctgtgaatgtcatc 680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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