View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10818_high_3 (Length: 431)
Name: NF10818_high_3
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10818_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 7 - 355
Target Start/End: Original strand, 13967437 - 13967785
Alignment:
| Q |
7 |
caaacttcatggcaaaggatattggcttcgagaacacagcaggaacgaataaacatcaagcagttgccctccgagtaacagcagatcaagcaatattcca |
106 |
Q |
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| T |
13967437 |
caaacttcatggcaaaggatattggcttcgagaacacagcaggaacaaataaaaatcaagcagttgccctccgagtaacagcagatcaagcaatattcca |
13967536 |
T |
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| Q |
107 |
caactgtcaaatggacggtttccaagacacactctacgtccaatcccaacgccaattctaccgtgactgcgccatctctggcacaatcgactttgttttt |
206 |
Q |
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| T |
13967537 |
caactgtcaaatggacggtttccaagacacactctacgtccaatcccaacgtcaattctaccgtgactgcgccatctctggcacaatcgactttgttttt |
13967636 |
T |
|
| Q |
207 |
ggtgacgccttcggagttttccaaaattgcaaactaatttgcagagtgccagcaaaaggcctacaatgtctagtaaccgcaggtggacgagaaaaacaaa |
306 |
Q |
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| T |
13967637 |
ggcgacgcctttggagttttccaaaattgcaaactaatttgtagagtgccagcaaaaggccaaaaatgtctagtaaccgcaggtggacgagataaacaaa |
13967736 |
T |
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| Q |
307 |
acagcgcaagtgctctagttttccaaagttctcacttcacaggtgaacc |
355 |
Q |
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| T |
13967737 |
acagtgcaagtgctctcgttttcctaagttctcacttcacaggtgaacc |
13967785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 8 - 244
Target Start/End: Original strand, 13960274 - 13960510
Alignment:
| Q |
8 |
aaacttcatggcaaaggatattggcttcgagaacacagcaggaacgaataaacatcaagcagttgccctccgagtaacagcagatcaagcaatattccac |
107 |
Q |
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| T |
13960274 |
aaacttcatggcaaaggatatcagcatcgaaaacacagcaggaccagagaaacatcaagcagttgcactccgagtaacagcagacaaagcaatcttctac |
13960373 |
T |
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| Q |
108 |
aactgtcaaatggacggtttccaagacacactctacgtccaatcccaacgccaattctaccgtgactgcgccatctctggcacaatcgactttgtttttg |
207 |
Q |
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| T |
13960374 |
aactgccaaatagatggttaccaagcaacactcttcgccgaatcccaacgtcaattctaccgtgactgcagcatctctggcacaatcgacatgatctacg |
13960473 |
T |
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| Q |
208 |
gtgacgccttcggagttttccaaaattgcaaactaat |
244 |
Q |
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| T |
13960474 |
gtgacgcctttgcagttttccaaaactgcaaactaat |
13960510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 422
Target Start/End: Original strand, 13967818 - 13967852
Alignment:
| Q |
388 |
ttttattgtcaccgttattaataataatttcttct |
422 |
Q |
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| T |
13967818 |
ttttattgtcaccgttattaataataatttcttct |
13967852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 60 - 241
Target Start/End: Complemental strand, 49871189 - 49871008
Alignment:
| Q |
60 |
catcaagcagttgccctccgagtaacagcagatcaagcaatattccacaactgtcaaatggacggtttccaagacacactctacgtccaatcccaacgcc |
159 |
Q |
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| T |
49871189 |
catcaagcagtggccctccgtgtaacagcagacaaagcattgttctacaactgtgaaatgaacggttaccaagatacactctacacacaatccaaaagac |
49871090 |
T |
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| Q |
160 |
aattctaccgtgactgcgccatctctggcacaatcgactttgtttttggtgacgccttcggagttttccaaaattgcaaact |
241 |
Q |
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| T |
49871089 |
aattctaccgcgactgcaccattaccggaacaatcgactttgtctttggtgatgcagttggagttttccaaaactgcaaact |
49871008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 63 - 238
Target Start/End: Complemental strand, 49865249 - 49865074
Alignment:
| Q |
63 |
caagcagttgccctccgagtaacagcagatcaagcaatattccacaactgtcaaatggacggtttccaagacacactctacgtccaatcccaacgccaat |
162 |
Q |
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| T |
49865249 |
caagcagtggccctccgtgtaacagcagacaaagcattgttctacaactgtcaaatggacggttaccaagatacactctacacacaatccaaaagacaat |
49865150 |
T |
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| Q |
163 |
tctaccgtgactgcgccatctctggcacaatcgactttgtttttggtgacgccttcggagttttccaaaattgcaa |
238 |
Q |
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| T |
49865149 |
tctaccgcgactgcactattagcggaacaattgactttgtctttggtgatgctgttggagttttccaaaactgcaa |
49865074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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