View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10818_high_37 (Length: 212)
Name: NF10818_high_37
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10818_high_37 |
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| [»] scaffold0007 (1 HSPs) |
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| [»] scaffold0074 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 20205928 - 20206114
Alignment:
| Q |
11 |
agcagagacggtatgtcacctctacacatgaacgatccatagacggactcagaaggatttatactagtgactgtatggttgtagaatttggtgtttcctt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20205928 |
agcagagacggtatgtcacctctacacatgaacgatccatagacggactcagaaggatttatactagtgactgtatggttgtagaatttggtgtttcctt |
20206027 |
T |
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| Q |
111 |
tggcttttgatgacaatgaagagaagaggtttaagagattgctttggaaggtgctgctgggtttggtaacgttgttgggacaaattg |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20206028 |
tggcttttgatgacaatgaagagaagaggtttaagagattgctttggaaggtgctgctgggtttggtaacgttgttgggacaaattg |
20206114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 22099951 - 22100137
Alignment:
| Q |
11 |
agcagagacggtatgtcacctctacacatgaacgatccatagacggactcagaaggatttatactagtgactgtatggttgtagaatttggtgtttcctt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22099951 |
agcagagacggtatgtcacctctacacatgaacgatccatagacggactcagaaggatttatactagtgactgtatggttgtagaatttggtgtttcctt |
22100050 |
T |
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| Q |
111 |
tggcttttgatgacaatgaagagaagaggtttaagagattgctttggaaggtgctgctgggtttggtaacgttgttgggacaaattg |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22100051 |
tggcttttgatgacaatgaagagaagaggtttaagagattgctttggaaggtgctgctgggtttggtaacgttgttgggacaaattg |
22100137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 21972493 - 21972675
Alignment:
| Q |
15 |
gagacggtatgtcacctctacacatgaacgatccatagacggactcagaaggatttatactagtgactgtatggttgtagaatttggtgtttcctttggc |
114 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||| | || | |||||||||||||||||| |||||||||||||||||| ||| |||| |
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| T |
21972493 |
gagagggtatgtcacctctacacatgaacaatccatagacggatacggacgaatttatactagtgactgtggtgttgtagaatttggtgttgcctatggc |
21972592 |
T |
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| Q |
115 |
ttttgatgacaatgaagagaagaggtttaagagattgctttggaaggtgctgctgggtttggtaacgttgttgggacaaattg |
197 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
21972593 |
ttttgatgacaatgaattgaagaggtttatgagattgctttggaaggtgctgcttggtttggtaacgttgatgggacaaattg |
21972675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 26 - 134
Target Start/End: Original strand, 20128336 - 20128444
Alignment:
| Q |
26 |
tcacctctacacatgaacgatccatagacggactcagaaggatttatactagtgactgtatggttgtagaatttggtgtttcctttggcttttgatgaca |
125 |
Q |
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|||||||| ||||||||| |||||||||| || ||||| || ||||||||||||||||| ||||||||||| |||||| || |||||||||||| | |
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| T |
20128336 |
tcacctctgcacatgaacaatccatagacagaatcagaggggtttatactagtgactgtggtgttgtagaattcggtgttgccgacggcttttgatgata |
20128435 |
T |
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| Q |
126 |
atgaagaga |
134 |
Q |
| |
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| ||||||| |
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| T |
20128436 |
aagaagaga |
20128444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 26 - 134
Target Start/End: Complemental strand, 22204534 - 22204426
Alignment:
| Q |
26 |
tcacctctacacatgaacgatccatagacggactcagaaggatttatactagtgactgtatggttgtagaatttggtgtttcctttggcttttgatgaca |
125 |
Q |
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|||||||| ||||||||| |||||||||| || ||||| || ||||||||||||||||| ||||||||||| |||||| || |||||||||||| | |
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| T |
22204534 |
tcacctctgcacatgaacaatccatagacagaatcagaggggtttatactagtgactgtggtgttgtagaattcggtgttgccgacggcttttgatgata |
22204435 |
T |
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| Q |
126 |
atgaagaga |
134 |
Q |
| |
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| ||||||| |
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| T |
22204434 |
aagaagaga |
22204426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 126
Target Start/End: Original strand, 20238535 - 20238636
Alignment:
| Q |
25 |
gtcacctctacacatgaacgatccatagacggactcagaaggatttatactagtgactgtatggttgtagaatttggtgtttcctttggcttttgatgac |
124 |
Q |
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|||||| || ||||||||| |||||||||| || |||| ||||||| |||||||||||| ||||||||||| ||||| || |||||||||||||| |
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| T |
20238535 |
gtcacccctgcacatgaacaatccatagacagaatcagtgggatttacactagtgactgtggtgttgtagaattcagtgttgtctatggcttttgatgac |
20238634 |
T |
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| Q |
125 |
aa |
126 |
Q |
| |
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|| |
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| T |
20238635 |
aa |
20238636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 126
Target Start/End: Original strand, 22132519 - 22132620
Alignment:
| Q |
25 |
gtcacctctacacatgaacgatccatagacggactcagaaggatttatactagtgactgtatggttgtagaatttggtgtttcctttggcttttgatgac |
124 |
Q |
| |
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|||||| || ||||||||| |||||||||| || |||| ||||||| |||||||||||| ||||||||||| ||||| || |||||||||||||| |
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| T |
22132519 |
gtcacccctgcacatgaacaatccatagacagaatcagtgggatttacactagtgactgtggtgttgtagaattcagtgttgtctatggcttttgatgac |
22132618 |
T |
|
| Q |
125 |
aa |
126 |
Q |
| |
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|| |
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| T |
22132619 |
aa |
22132620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 134
Target Start/End: Original strand, 20086685 - 20086731
Alignment:
| Q |
88 |
gttgtagaatttggtgtttcctttggcttttgatgacaatgaagaga |
134 |
Q |
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||||||||||| |||||| || |||||||||||||||||||||||| |
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| T |
20086685 |
gttgtagaattcggtgttgccggtggcttttgatgacaatgaagaga |
20086731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 18997418 - 18997527
Alignment:
| Q |
25 |
gtcacctctacacatgaacgatccatagacggactcagaaggatttatactagtgactgtatggttgtagaatttggtgtttcctttggcttttgatgac |
124 |
Q |
| |
|
|||||| || ||||||||| |||||||||| || |||| |||||| || |||||||| ||||||||||| |||||| | |||||| ||||||| |
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| T |
18997418 |
gtcacccctgcacatgaacaatccatagacagaatcagttcgatttacaccggtgactgtggtgttgtagaattcggtgttgacggtggcttctgatgac |
18997517 |
T |
|
| Q |
125 |
aatgaagaga |
134 |
Q |
| |
|
|||||||||| |
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|
| T |
18997518 |
aatgaagaga |
18997527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 4819 - 4742
Alignment:
| Q |
88 |
gttgtagaatttggtgtttcctttggcttttgatgacaatgaagagaagaggtttaagagattgctttggaaggtgct |
165 |
Q |
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||||||||||| |||||| ||| |||||||||||||||| ||||| | |||| | | |||||| ||||||||||||| |
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| T |
4819 |
gttgtagaattcggtgttgcctgtggcttttgatgacaaggaagaaaggagggtcatgagattagtttggaaggtgct |
4742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 47307 - 47261
Alignment:
| Q |
88 |
gttgtagaatttggtgtttcctttggcttttgatgacaatgaagaga |
134 |
Q |
| |
|
||||||||||| |||||| || |||||||||||||||||||||||| |
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|
| T |
47307 |
gttgtagaattcggtgttgccggtggcttttgatgacaatgaagaga |
47261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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