View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10818_high_4 (Length: 426)
Name: NF10818_high_4
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10818_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Complemental strand, 33357570 - 33357167
Alignment:
| Q |
18 |
cttggaaccgcaaaaaacttcacacactcctccataggtctctgatcaggaagatcaaaaatacaattcttcttcacatcaagcacaccactttttataa |
117 |
Q |
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| T |
33357570 |
cttggaaccgcataaaacttcacacaatcctccataggtctctgatcaggaagatcaaaaatacaattcttcttcacatcaagcacaccactttttataa |
33357471 |
T |
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| Q |
118 |
gcttcctacacaacggtccaactctattaaaatagttataagacaatgttaaattctccaaattccccaacgaacaaaccacttccggaacctgaccgta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33357470 |
gcttcctacacaacggtccaactctattaaaatagttataagacaacgttaaattctccaaattccccaacgaacaaaccacttccggaacctgaccgta |
33357371 |
T |
|
| Q |
218 |
caacatgttcctagcaaagtttaactgttccaccttcttcaaacaccctaaagaaaacggtaatggacctgttaaaaggttgttacctgcgtcgaaaagt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33357370 |
caacatgttcctagcaaagtttaactgttccaccttcttcaaacaccctaaagaaaacggtaatggacctgttaaaaggttgttacctgcgtcgaaaagt |
33357271 |
T |
|
| Q |
318 |
tggaggtttttaaggaaccctatttcatatggaagacaacctgttaattggttgtttagtaataaaacttcgagtaatgttgatgaggcttttcctatgc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33357270 |
tggaggtttttaaggaaccctatttcatatggaagacaacctgttaattggttgtttagtaataaaacttcgagtaatgttgatgaggcttttcctatgg |
33357171 |
T |
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| Q |
418 |
tact |
421 |
Q |
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|||| |
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| T |
33357170 |
tact |
33357167 |
T |
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