View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10818_high_9 (Length: 360)
Name: NF10818_high_9
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10818_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 8137544 - 8137200
Alignment:
| Q |
1 |
taataatagcaaa-cactgcaaataaactggcccttatgttggaatatttattaacaaggaaatgagtaattgaatacattgttgctaatgctatctatg |
99 |
Q |
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| T |
8137544 |
taataatagcaaaacactgcaaataaactggcccttatgttggaatatgtattaacaaggaaatgagtaattgaatacattgttgctaatgctatctatg |
8137445 |
T |
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| Q |
100 |
tggtggtccatgtaacaaaataaaatatactatgtgatggtatgaacctggtaagcagaagaaccaattccaaagagaaaatcatcaggaaaaaggctcc |
199 |
Q |
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| T |
8137444 |
tggtggtccatgtaacaaaataaa-tatactatgtgatggtatgaacctggtaagcagaagaaccaattccaaagagaaaatcatcaggaaaaaggctcc |
8137346 |
T |
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| Q |
200 |
tattgaatgaagcatattgacttggttctacnnnnnnnggttcagttccagtgacaacagccaaaagggtagctatagaaaaaagatagagaagggaagg |
299 |
Q |
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| T |
8137345 |
tattgaatgaagcatattgacttggttctactttttttggttcagttccagtgacaacagccaaaagggtagctagagaaaaaagatagagaagggaagg |
8137246 |
T |
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| Q |
300 |
agctatagctcccatggctgaaaattgtgatgtctaaagatgaagt |
345 |
Q |
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| T |
8137245 |
acctatagctcccatggctgcaaattgtgatgtctaaagatgaagt |
8137200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 138 - 319
Target Start/End: Complemental strand, 8162067 - 8161883
Alignment:
| Q |
138 |
ggtatgaacctggtaagcagaagaaccaattccaaagagaaaatcatcaggaaaaaggctcctattgaatga---agcatattgacttggttctacnnnn |
234 |
Q |
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| T |
8162067 |
ggtatgaacctggtaagcagaagaaccgattccaaagagaaaatcagaaggaaaaagggtcctgttgaatgaagcagcatagtgacttggatgcacatgt |
8161968 |
T |
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| Q |
235 |
nnnggttcagttccagtgacaacagccaaaagggtagctatagaaaaaagatagagaagggaaggagctatagctcccatggctg |
319 |
Q |
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| T |
8161967 |
tgtgatgcagttccagtgacaacagccaaaagtgtagccagagaaaaaagatagaggaggaaatgacttatagctttcatggctg |
8161883 |
T |
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