View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10818_low_1 (Length: 564)
Name: NF10818_low_1
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10818_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 454; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 4 - 560
Target Start/End: Original strand, 4236302 - 4236867
Alignment:
| Q |
4 |
ccttcaaccactgtttcatctgtgtcctgatttggttgaagaattccgcattcaaatgctatagcttttgcagtgaaaacattatcacctgtcatcagag |
103 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4236302 |
ccttcaaccactgtttcatccgtgtcctgattaggttgaagaattccacattcaaatgctatagcttttgcagtgaaaacattgtcacctgtcatcagag |
4236401 |
T |
|
| Q |
104 |
ataaagttagttaatagtcaattaagaattagtta---------ttcttattatcttcttcgtattcatatagactcgtatgtataaatagagaatttta |
194 |
Q |
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||||||| |||||| || |||||| || |||||| |||||||||| ||| || | | ||||||| |||||||||||||||||||||||||| |
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| T |
4236402 |
ataaagtatgttaatggttaattaacaactagttaggttaactattcttattatattcatcatttccatataggctcgtatgtataaatagagaatttta |
4236501 |
T |
|
| Q |
195 |
tattatcaagttatcgataaataagatattttagtaatacctgtaatcattttgacattcacaccagcatgttggcaagcttccactgccgtcttcaccc |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4236502 |
tattatcaagttatcgataaataagatattttagtaatacctgtaatcattttgacattcacaccagcatgttggcaagcttccactgtcgtcttcaccc |
4236601 |
T |
|
| Q |
295 |
ccgggcgacatggatccttaatgcctacaagtcctaacaatgttaaaccattgtcttttaccaccatcttgttcatatctccttcaacttcaagctcttc |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4236602 |
ccgggcgacatggatccttaatgcctacaagtcctaacaatgttaaaccattgtcttttaccaccatcttgttcatatctccttcaacttcaagctcttc |
4236701 |
T |
|
| Q |
395 |
gtctgtaacttttgtatacgctaaagcgatgcaacgaagactactagccgccataccttgaataatcctttcgaatttcaacatggtttcattgtcaaga |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4236702 |
gtctgtaacttttgtatacgctaaagcgatgcaacgaagactactagccgccataccttgaataatcctttcgaatttcaacatggtttcattgtcaaga |
4236801 |
T |
|
| Q |
495 |
tctttcgaaattccaaaacgatcatggtattttgagcacattcttagtaccatctctgctcctcct |
560 |
Q |
| |
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| T |
4236802 |
tctttcgaaattccaaaaccatcatggtattttgaacacattcttagtaccatctctgctgctcct |
4236867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 238
Target Start/End: Complemental strand, 37067926 - 37067887
Alignment:
| Q |
199 |
atcaagttatcgataaataagatattttagtaatacctgt |
238 |
Q |
| |
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||||||||||| |||||| ||||||||||||||||||||| |
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| T |
37067926 |
atcaagttatcaataaatgagatattttagtaatacctgt |
37067887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 37060449 - 37060411
Alignment:
| Q |
200 |
tcaagttatcgataaataagatattttagtaatacctgt |
238 |
Q |
| |
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|||||||||| |||||| ||||||||||||||||||||| |
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| T |
37060449 |
tcaagttatcaataaatgagatattttagtaatacctgt |
37060411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 211 - 560
Target Start/End: Original strand, 6185611 - 6185960
Alignment:
| Q |
211 |
ataaataagatattttagtaatacctgtaatcattttgacattcacaccagcatgttggcaagcttccactgccgtcttcacccccgggcgacatggatc |
310 |
Q |
| |
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|||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| |||||||||||||| |
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| T |
6185611 |
ataaatgagatattatagtaatacctgtaatcattttgacattcacaccggcatgttggcaagcttccaccgctgtcttcacccctgggcgacatggatc |
6185710 |
T |
|
| Q |
311 |
cttaatgcctacaagtcctaacaatgttaaaccattgtcttttaccaccatcttgttcatatctccttcaacttcaagctcttcgtctgtaacttttgta |
410 |
Q |
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||||||||| ||||||||||||||||||||| |||| |||||||||||||||||| | | ||||||||| | | |||| |||||||| |||| |||| |
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| T |
6185711 |
cttaatgccgacaagtcctaacaatgttaaatcattctcttttaccaccatcttggtgttgtctccttcatgtcctagcttttcgtctgagacttctgta |
6185810 |
T |
|
| Q |
411 |
tacgctaaagcgatgcaacgaagactactagccgccataccttgaataatcctttcgaatttcaacatggtttcattgtcaagatctttcgaaattccaa |
510 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| | ||||||||||||||||||| |||||||| |
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| T |
6185811 |
cacgctaaagcgatgcaacgaagactactagctgccataccttgaataatgctttcgaatttcagcatagattcattgtcaagatctttcaaaattccat |
6185910 |
T |
|
| Q |
511 |
aacgatcatggtattttgagcacattcttagtaccatctctgctcctcct |
560 |
Q |
| |
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||| ||||| |||| |||| |||||||||||||||||||| ||| ||||| |
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| T |
6185911 |
aaccatcatagtatcttgaacacattcttagtaccatctcggctgctcct |
6185960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 6185426 - 6185515
Alignment:
| Q |
4 |
ccttcaaccactgtttcatctgtgtcctgatttggttgaagaattccgcattcaaatgctatagcttttgcagtgaaaacattatcacct |
93 |
Q |
| |
|
||||||||||| ||||||||| |||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| |||||| |
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| T |
6185426 |
ccttcaaccaccgtttcatctatgtcctgattaggttgaagaattccacattcaaatgctatagctttcgcagtgaaaacattgtcacct |
6185515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 464 - 560
Target Start/End: Original strand, 21847622 - 21847718
Alignment:
| Q |
464 |
ttcgaatttcaacatggtttcattgtcaagatctttcgaaattccaaaacgatcatggtattttgagcacattcttagtaccatctctgctcctcct |
560 |
Q |
| |
|
||||||||||||||| | | ||||||||||||||||| |||||||| | | | | ||| |||| |||||||||||||||||||||||| ||||| |
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| T |
21847622 |
ttcgaatttcaacatagatccattgtcaagatctttcaaaattccacagccaatgtaatatcttgaacacattcttagtaccatctctgcttctcct |
21847718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 238
Target Start/End: Original strand, 402298 - 402337
Alignment:
| Q |
199 |
atcaagttatcgataaataagatattttagtaatacctgt |
238 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| |
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| T |
402298 |
atcaagttatcgataaatgagatattttagtaatacctgt |
402337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 45369992 - 45369930
Alignment:
| Q |
125 |
ttaagaattagttattcttattatcttcttcgtattcatatagactcgtatgtataaatagag |
187 |
Q |
| |
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||||||||||||||| ||| ||||| | ||| | ||||||| ||||| ||||||||||||||| |
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| T |
45369992 |
ttaagaattagttatccttgttatccttttcattttcatatggactcatatgtataaatagag |
45369930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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