View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10818_low_11 (Length: 371)

Name: NF10818_low_11
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10818_low_11
NF10818_low_11
[»] chr3 (8 HSPs)
chr3 (4-247)||(52087467-52087712)
chr3 (296-367)||(52088138-52088209)
chr3 (176-242)||(11511300-11511366)
chr3 (176-242)||(55122135-55122201)
chr3 (176-240)||(41755056-41755120)
chr3 (179-233)||(11510222-11510276)
chr3 (197-242)||(50122383-50122428)
chr3 (182-242)||(55121581-55121641)
[»] chr6 (3 HSPs)
chr6 (142-244)||(19757887-19757993)
chr6 (197-236)||(5723058-5723097)
chr6 (197-233)||(25987139-25987175)
[»] chr7 (10 HSPs)
chr7 (176-242)||(46088963-46089029)
chr7 (132-233)||(31873857-31873960)
chr7 (176-238)||(46089676-46089738)
chr7 (176-233)||(46741412-46741469)
chr7 (142-233)||(4997298-4997393)
chr7 (142-233)||(19804633-19804727)
chr7 (142-233)||(31873344-31873438)
chr7 (162-242)||(47405451-47405533)
chr7 (142-242)||(35200787-35200891)
chr7 (133-177)||(38858016-38858061)
[»] chr5 (2 HSPs)
chr5 (142-242)||(9070420-9070523)
chr5 (133-242)||(18848039-18848151)
[»] chr2 (6 HSPs)
chr2 (132-240)||(16118977-16119088)
chr2 (144-242)||(16119119-16119220)
chr2 (176-233)||(33667747-33667804)
chr2 (176-233)||(33667877-33667934)
chr2 (160-233)||(43977555-43977631)
chr2 (197-233)||(16340580-16340616)
[»] scaffold0153 (2 HSPs)
scaffold0153 (176-242)||(17390-17456)
scaffold0153 (159-242)||(16854-16939)
[»] chr1 (7 HSPs)
chr1 (142-240)||(10974750-10974851)
chr1 (159-242)||(21263330-21263415)
chr1 (142-241)||(33205427-33205529)
chr1 (132-178)||(46341582-46341629)
chr1 (142-233)||(52427529-52427623)
chr1 (132-188)||(26354554-26354613)
chr1 (186-242)||(32160722-32160778)
[»] chr8 (1 HSPs)
chr8 (176-240)||(3642524-3642589)
[»] chr4 (1 HSPs)
chr4 (176-233)||(40900250-40900307)


Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 52087467 - 52087712
Alignment:
Q  4 caggtacaccatcatgcttcaatgaagaacagtcatacacaggtgttgtgtgggagcgatgttctcacaatactttcttgttcttttctttattctcacc 103  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52087467 caggtacaccatcgtgcttcaatgaagaacagtcgtacacaggtgttgtgtgggagcgatgttctcacaatactttcttgttcttttctttattctcacc 52087566  T
Q  104 ccnnnnnnntatgactagaaaaggtgcaagaaaattaatgttgacacatttgataggctgaaaaacatatgt--aagacgaaaataccccttcgccagtt 201  Q
    ||       ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||  |||||||||||||||| ||| |||||    
T  52087567 ccaaaaaaatatgactagaaaaggtgcaagaaaattaacgttgacatatttgataggctgaaaaacatatgtaaaagacgaaaataccccctcgacagtt 52087666  T
Q  202 aactaccgaagtaatgaaccggctgcagttaattgccgaagaacac 247  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  52087667 aactaccgaagtaatgaaccggctgcagttaagtgccgaagaacac 52087712  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 296 - 367
Target Start/End: Original strand, 52088138 - 52088209
Alignment:
Q  296 tgcaaagattgctttagtactttagtgactaaatctcagacgttagcaagcataacaattcaacaaacttca 367  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52088138 tgcaaagattgctttagtgctttagtgactaaatctcagacgttagcaagcataacaattcaacaaacttca 52088209  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 242
Target Start/End: Complemental strand, 11511366 - 11511300
Alignment:
Q  176 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 242  Q
    ||||||||||| || | ||| ||||||||||||||| ||||||||||||||||||||| | ||||||    
T  11511366 aagacgaaaatgcctcctcgacagttaactaccgaaataatgaaccggctgcagttaactaccgaag 11511300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 242
Target Start/End: Complemental strand, 55122201 - 55122135
Alignment:
Q  176 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 242  Q
    ||||||||||| |||| ||| ||||||||||||||| ||||||||||| ||||||||| | ||||||    
T  55122201 aagacgaaaatgccccctcgacagttaactaccgaaataatgaaccggttgcagttaactcccgaag 55122135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 41755120 - 41755056
Alignment:
Q  176 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccga 240  Q
    |||||||||||  ||| ||| ||||||||||| ||| |||||||||||||||| |||| ||||||    
T  41755120 aagacgaaaatgtcccctcgacagttaactactgaaataatgaaccggctgcaattaactgccga 41755056  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 11510222 - 11510276
Alignment:
Q  179 acgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaa 233  Q
    ||||||||| ||| ||| | ||||||||||||| ||||||||| |||||||||||    
T  11510222 acgaaaatatcccctcgacggttaactaccgaaataatgaaccagctgcagttaa 11510276  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 50122383 - 50122428
Alignment:
Q  197 cagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 242  Q
    ||||||||||||||| | | ||||||||||||||||| ||||||||    
T  50122383 cagttaactaccgaaattaagaaccggctgcagttaactgccgaag 50122428  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 55121581 - 55121641
Alignment:
Q  182 aaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 242  Q
    ||||| |||| ||| ||||||||||||||| ||||||||||| ||| ||||| | ||||||    
T  55121581 aaaatgccccctcggcagttaactaccgaaataatgaaccggttgcggttaactaccgaag 55121641  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 142 - 244
Target Start/End: Complemental strand, 19757993 - 19757887
Alignment:
Q  142 tgttgacacatttgatagg-ctgaaaaa--catatgtaagacgaaaataccccttcgccagttaactaccgaagt-aatgaaccggctgcagttaattgc 237  Q
    ||||||||||| ||||||| ||||||||  |||||  ||||||||||||| ||| |  ||||||||||||||||| || ||||||||||||||||| |||    
T  19757993 tgttgacacatatgatagggctgaaaaatacatataaaagacgaaaatactcctgcagcagttaactaccgaagttaaagaaccggctgcagttaactgc 19757894  T
Q  238 cgaagaa 244  Q
    |||||||    
T  19757893 cgaagaa 19757887  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 5723058 - 5723097
Alignment:
Q  197 cagttaactaccgaagtaatgaaccggctgcagttaattg 236  Q
    |||||||||| |||| ||||||||||||||||||||||||    
T  5723058 cagttaactatcgaaataatgaaccggctgcagttaattg 5723097  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 25987139 - 25987175
Alignment:
Q  197 cagttaactaccgaagtaatgaaccggctgcagttaa 233  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  25987139 cagttaactaccgaaataatgaactggctgcagttaa 25987175  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 242
Target Start/End: Original strand, 46088963 - 46089029
Alignment:
Q  176 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 242  Q
    ||||| ||||| |||| ||||||||||||||||||| ||||||||||||||||||||| | ||||||    
T  46088963 aagacaaaaatgccccctcgccagttaactaccgaaataatgaaccggctgcagttaactcccgaag 46089029  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 233
Target Start/End: Complemental strand, 31873960 - 31873857
Alignment:
Q  132 agaaaattaatgttgacacatttgatagg-ctgaaaa-acatatgtaagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcag 229  Q
    ||||||||  ||||||||||| ||||||| ||||||| |||| |  |||||||||||||| || || |||||||||||||| ||   |||||||||||||    
T  31873960 agaaaattgttgttgacacatatgatagggctgaaaacacatgtaaaagacgaaaatacctctacggcagttaactaccgatgtttggaaccggctgcag 31873861  T
Q  230 ttaa 233  Q
    ||||    
T  31873860 ttaa 31873857  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 46089738 - 46089676
Alignment:
Q  176 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgcc 238  Q
    ||||||||||| |||| ||| |||||||||||| || || |||||||||||||||||| ||||    
T  46089738 aagacgaaaatgccccctcggcagttaactaccaaaatagtgaaccggctgcagttaactgcc 46089676  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 46741469 - 46741412
Alignment:
Q  176 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaa 233  Q
    |||||||||||  ||||||| || |||||||||||| ||||||| |||||||||||||    
T  46741469 aagacgaaaatgtcccttcgacaattaactaccgaaataatgaatcggctgcagttaa 46741412  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 233
Target Start/End: Original strand, 4997298 - 4997393
Alignment:
Q  142 tgttgacacatttgataggct-gaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatg-aaccggctgcagttaa 233  Q
    |||| |||||| ||||||| | |||||||| ||||||  ||||||||||||||| || |||||||||||||||||  || |||||||| |||||||    
T  4997298 tgtttacacatatgatagggttgaaaaacacatgtaaaagacgaaaatacccctacggcagttaactaccgaagttttgaaaccggctacagttaa 4997393  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 19804727 - 19804633
Alignment:
Q  142 tgttgacacatttgatagg-ctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaa 233  Q
    ||||||||||| ||||||| |||||||||| ||||||  ||||||||| | | | || || ||||||||||||||   |||||||||||||||||    
T  19804727 tgttgacacatgtgataggactgaaaaacacatgtaaaagacgaaaatgctcatgcgacaattaactaccgaagtttggaaccggctgcagttaa 19804633  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 233
Target Start/End: Original strand, 31873344 - 31873438
Alignment:
Q  142 tgttgacacatttgata-ggctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaa 233  Q
    ||||||||||| ||||| |||||||||||| ||||||  || |||||| | ||| || |||||||||||||||||   |||||| ||||||||||    
T  31873344 tgttgacacatatgataaggctgaaaaacacatgtaaaagatgaaaatgctcctgcggcagttaactaccgaagtttagaaccgactgcagttaa 31873438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 47405533 - 47405451
Alignment:
Q  162 tgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 242  Q
    ||||||||| ||||||  |||||||||  ||| ||| ||||||||||| ||| ||| ||||||||||||||||| | ||||||    
T  47405533 tgaaaaacacatgtaaaagacgaaaatgtcccctcggcagttaactactgaaataaagaaccggctgcagttaactaccgaag 47405451  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 35200891 - 35200787
Alignment:
Q  142 tgttgacacatttgatagg-ctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaa-ccggctgcagttaattgc 237  Q
    |||| |||||| ||||||| |||||||||| ||||||  || |||||| ||||| || |||||| ||||||||||  |||| |||||||||||||| | |    
T  35200891 tgtttacacatatgatagggctgaaaaacacatgtaaaagatgaaaatgcccctgcggcagttagctaccgaagttttgaaaccggctgcagttaactac 35200792  T
Q  238 cgaag 242  Q
    |||||    
T  35200791 cgaag 35200787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 38858061 - 38858016
Alignment:
Q  133 gaaaattaatgttgacacatttgata-ggctgaaaaacatatgtaa 177  Q
    ||||||| |||||||||||||||||| |||||||||||| ||||||    
T  38858061 gaaaattgatgttgacacatttgatagggctgaaaaacacatgtaa 38858016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 9070523 - 9070420
Alignment:
Q  142 tgttgacacatttgatagg-ctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgcc 238  Q
    ||||||||||| ||||||| |||||||| | ||||||  ||||||||||  ||| || ||||||||||||||||||| ||||| ||||||||||| | ||    
T  9070523 tgttgacacatatgataggactgaaaaatacatgtaaaagacgaaaatattcctgcggcagttaactaccgaagtaaggaaccagctgcagttaacttcc 9070424  T
Q  239 gaag 242  Q
    ||||    
T  9070423 gaag 9070420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 242
Target Start/End: Complemental strand, 18848151 - 18848039
Alignment:
Q  133 gaaaattaatgttgacacatttgata-ggctgaaaaacatatgt--aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcag 229  Q
    |||||||| ||||||||||| ||||| |||||||||||| ||||  ||||||||||| ||||| |   | ||||||||||||||    ||||| ||||||    
T  18848151 gaaaattattgttgacacatatgatagggctgaaaaacacatgtaaaagacgaaaatgcccctgcagtaattaactaccgaagtttaaaaccgactgcag 18848052  T
Q  230 ttaattgccgaag 242  Q
    |||| | ||||||    
T  18848051 ttaactaccgaag 18848039  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 132 - 240
Target Start/End: Original strand, 16118977 - 16119088
Alignment:
Q  132 agaaaattaatgttgacacatttgatagg-ctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgca 228  Q
    ||||||||  ||||||||||| ||||||| |||||||||| ||||||  ||||||||| ||||| |  | |||||||||||||||||  ||||| |||||    
T  16118977 agaaaattgctgttgacacatatgatagggctgaaaaacacatgtaaatgacgaaaatgcccctgcaacggttaactaccgaagtaagaaaccgactgca 16119076  T
Q  229 gttaattgccga 240  Q
    ||||| ||||||    
T  16119077 gttaactgccga 16119088  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 242
Target Start/End: Complemental strand, 16119220 - 16119119
Alignment:
Q  144 ttgacacatttgatag-gctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccga 240  Q
    ||||||||| |||||| ||| ||||||||||||||  ||||||||| ||| |    ||||| ||||||||||||| ||||||||||||||||| ||| ||    
T  16119220 ttgacacatatgatagagctaaaaaacatatgtaaaagacgaaaatgcccatgtagcagtttactaccgaagtaaagaaccggctgcagttaactgctga 16119121  T
Q  241 ag 242  Q
    ||    
T  16119120 ag 16119119  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 33667747 - 33667804
Alignment:
Q  176 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaa 233  Q
    |||| ||||||  ||| ||| ||||||||||||||| |||||||||||||||||||||    
T  33667747 aagatgaaaatctcccctcggcagttaactaccgaaataatgaaccggctgcagttaa 33667804  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 33667934 - 33667877
Alignment:
Q  176 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaa 233  Q
    ||||||||||| || | ||  ||||||||||||||| |||||||||||||||||||||    
T  33667934 aagacgaaaatgcctcctcagcagttaactaccgaaataatgaaccggctgcagttaa 33667877  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 43977555 - 43977631
Alignment:
Q  160 gctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatg-aaccggctgcagttaa 233  Q
    ||||||||||| ||||||  ||||||||| ||||| || ||| |||||||||||||  || ||||||||||||||||    
T  43977555 gctgaaaaacacatgtaaaagacgaaaatgcccctgcggcagctaactaccgaagttttgaaaccggctgcagttaa 43977631  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 16340616 - 16340580
Alignment:
Q  197 cagttaactaccgaagtaatgaaccggctgcagttaa 233  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  16340616 cagttaactaccgaagtaaggaaccggttgcagttaa 16340580  T

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Target: scaffold0153 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 242
Target Start/End: Complemental strand, 17456 - 17390
Alignment:
Q  176 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 242  Q
    |||||||||||  ||| ||| ||||||||||||||| ||||||||||||||||||||| | ||||||    
T  17456 aagacgaaaatgacccctcggcagttaactaccgaaataatgaaccggctgcagttaactaccgaag 17390  T

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Target: scaffold0153; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 242
Target Start/End: Original strand, 16854 - 16939
Alignment:
Q  159 ggctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 242  Q
    |||||||||||| ||||||  ||||||||| ||||| ||  ||||||||||||||||   ||||||| ||||||||| | ||||||    
T  16854 ggctgaaaaacacatgtaaaagacgaaaatgcccctgcggtagttaactaccgaagtttggaaccggttgcagttaactaccgaag 16939  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 10974851 - 10974750
Alignment:
Q  142 tgttgacacatttgatagg-ctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgcc 238  Q
    ||||||||||| ||||||| |||||||||| || |||  ||||||||| || || || ||||||||||| ||||||| ||||||| ||||||||| ||||    
T  10974851 tgttgacacatatgatagggctgaaaaacacatataaaagacgaaaatgcctctgcgacagttaactactgaagtaaggaaccggttgcagttaactgcc 10974752  T
Q  239 ga 240  Q
    ||    
T  10974751 ga 10974750  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 159 - 242
Target Start/End: Original strand, 21263330 - 21263415
Alignment:
Q  159 ggctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 242  Q
    |||||||||||| ||||||  || |||||||||||| || |||||||||||||||||   |||||| |||||||||||| ||||||    
T  21263330 ggctgaaaaacacatgtaaaagatgaaaatacccctgcggcagttaactaccgaagtttggaaccgactgcagttaattcccgaag 21263415  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 241
Target Start/End: Original strand, 33205427 - 33205529
Alignment:
Q  142 tgttgacacatttgatagg-ctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgcc 238  Q
    |||| |||||| ||||||| |||||||||| ||||||  ||||||||| || || || |||||| ||||||||||   |||||||||| |||||| ||||    
T  33205427 tgtttacacatatgatagggctgaaaaacacatgtaaaagacgaaaatgcctctgcggcagttacctaccgaagtttggaaccggctgtagttaactgcc 33205526  T
Q  239 gaa 241  Q
    |||    
T  33205527 gaa 33205529  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 46341582 - 46341629
Alignment:
Q  132 agaaaattaatgttgacacatttgata-ggctgaaaaacatatgtaag 178  Q
    |||||||| |||||||||||||||||| ||||||||||| ||||||||    
T  46341582 agaaaattgatgttgacacatttgatagggctgaaaaacgtatgtaag 46341629  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 52427623 - 52427529
Alignment:
Q  142 tgttgacacatttgatagg-ctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaa 233  Q
    |||||||| || ||||||| |||||||||| ||||||  ||||||||| || || |  |||||||||||||||||   |||||||||||||||||    
T  52427623 tgttgacatatatgataggactgaaaaacacatgtaaaagacgaaaatgcctctgctacagttaactaccgaagtttggaaccggctgcagttaa 52427529  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 26354613 - 26354554
Alignment:
Q  132 agaaaattaatgttgacacatttgatagg-ctgaaaaacatatgt--aagacgaaaatac 188  Q
    |||||||| |||||||| ||| ||||||| |||||||||||||||  |||||||||||||    
T  26354613 agaaaattgatgttgactcatatgatagggctgaaaaacatatgtaaaagacgaaaatac 26354554  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 32160722 - 32160778
Alignment:
Q  186 taccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 242  Q
    ||||||| || |||||||||||||||||   ||||||||||||||||| | ||||||    
T  32160722 tacccctgcggcagttaactaccgaagtttggaaccggctgcagttaacttccgaag 32160778  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 3642589 - 3642524
Alignment:
Q  176 aagacgaaaataccccttcgccagttaactaccgaag-taatgaaccggctgcagttaattgccga 240  Q
    ||||||||||||||| | || |||||||||| ||||| ||| ||||||| ||||||||| ||||||    
T  3642589 aagacgaaaatacccatgcggcagttaactatcgaagttaaagaaccggttgcagttaactgccga 3642524  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 40900250 - 40900307
Alignment:
Q  176 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaa 233  Q
    ||||||||||| |||| ||| |||||||||| |||| |||| |||||||| |||||||    
T  40900250 aagacgaaaatgccccatcggcagttaactatcgaaataataaaccggctacagttaa 40900307  T

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