View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10818_low_12 (Length: 367)
Name: NF10818_low_12
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10818_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 9527588 - 9527778
Alignment:
| Q |
16 |
aatgggtggaagaattcaatttcaatcctaataattaggtcagcattgtcttggcattttgaagatannnnnnnataggtgagtcacaagttaaaaattg |
115 |
Q |
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| T |
9527588 |
aatgtgtggaagaattcaatttcaatcctaattattaggacagcattgtcttggcattttgaagatatttttttataggtgagtcacaagttaaaaattg |
9527687 |
T |
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| Q |
116 |
gcaagttggcacaacacactaatgcaatgttacacttggtcagaaaaatacagtaaaagaagagaaacacttaaaggttcccttctataaat |
207 |
Q |
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| T |
9527688 |
acaagttggcataacacactaatgctatgttacacttggtcag-aaaatacagtaaaagaagagaaacacttaaaggttctcttctataaat |
9527778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 227 - 352
Target Start/End: Original strand, 9527847 - 9527972
Alignment:
| Q |
227 |
catgggttgctctatagttatttcaaattgtactttgtgtgatgtatttgctatatgttaggcaataaaaatatgccaagcaatgagttttcatctttaa |
326 |
Q |
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| T |
9527847 |
catgggttgctctatagttatttcaaattgtactttgtgtggtgcatttgctatatgttaggcaataaaaatatgccaagcaatgagttttcatctttaa |
9527946 |
T |
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| Q |
327 |
aacatataaaggtatcactaaatttg |
352 |
Q |
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| T |
9527947 |
aacatataaaggtatcattaaatttg |
9527972 |
T |
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