View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10818_low_14 (Length: 350)
Name: NF10818_low_14
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10818_low_14 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 11 - 350
Target Start/End: Complemental strand, 39790224 - 39789885
Alignment:
| Q |
11 |
cacagaaatcaacaccaagtccctttgcaagatacatctcattatcaccaaactctccctcctcatcaaaactcaccctgcaaactctatccacttcttc |
110 |
Q |
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| T |
39790224 |
cacagaaatcaacaccaagtccctttgcaagatacatctcattatcaccaaactctccctcctcatcaaaactcaccctgcaaactctatccacttcttc |
39790125 |
T |
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| Q |
111 |
actctgcatcattctattcatcacactgaactcatcatagctttcttcatcttcaatatcactttcttccacatcttcctcttcttcacgcaagccggtt |
210 |
Q |
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| T |
39790124 |
actctgcatcattctattcatcacactgaactcatcatagccttcttcatcttcaatatcactttcttccacatcttcctcttcttcacgcaagccggtt |
39790025 |
T |
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| Q |
211 |
cgcttagaaagagagaaagatggaatggtctcaagtgcaaaacctctttgttgtctagctgaatacctcttagaagaagagtccatataacttaatctct |
310 |
Q |
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| T |
39790024 |
cgcttagaaagagagaaagatggaatggtctcaagtgcaaaacctctttgttgtctagctgaatacctcttagaagaagagtccatataacttaatctct |
39789925 |
T |
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| Q |
311 |
cttcattgttgttgaaagtagtagcataggctaagtcttc |
350 |
Q |
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| T |
39789924 |
cttcattgttgttgaaagtagtagcataggctaagtcttc |
39789885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 190 - 298
Target Start/End: Original strand, 39411722 - 39411827
Alignment:
| Q |
190 |
tcttcttcacgcaagccggttcgcttagaaagagagaaagatggaatggtctcaagtgcaaaacctctttgttgtctagctgaatacctcttagaagaag |
289 |
Q |
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| T |
39411722 |
tcttcttcacgcaagcctgtttgctttgaaagagagaaagatggaatggtctctagtgcgaagcctct---ttgtctcactgaataccttttagaagaag |
39411818 |
T |
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| Q |
290 |
agtccatat |
298 |
Q |
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| T |
39411819 |
agtccatat |
39411827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 39411547 - 39411631
Alignment:
| Q |
18 |
atcaacaccaagtccctttgcaagatacatctcattatcaccaaactctccctcctcatcaaaactcaccctgcaaactctatcc |
102 |
Q |
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|||||||||||||||||||||||||||||| || |||| ||||| || |||||||||| |||||||||||||| ||||||||||| |
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| T |
39411547 |
atcaacaccaagtccctttgcaagatacatttctttattaccaacctttccctcctcaccaaaactcaccctgaaaactctatcc |
39411631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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