View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10818_low_15 (Length: 344)

Name: NF10818_low_15
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10818_low_15
NF10818_low_15
[»] chr4 (14 HSPs)
chr4 (14-328)||(2236729-2237043)
chr4 (193-259)||(40174634-40174701)
chr4 (188-269)||(21731577-21731659)
chr4 (178-270)||(8328030-8328124)
chr4 (187-226)||(20656150-20656189)
chr4 (199-270)||(2996638-2996711)
chr4 (188-226)||(15173224-15173262)
chr4 (199-280)||(17822797-17822879)
chr4 (188-265)||(27329997-27330075)
chr4 (188-264)||(49940088-49940165)
chr4 (188-280)||(52315118-52315211)
chr4 (209-280)||(1706678-1706750)
chr4 (234-270)||(31642258-31642294)
chr4 (188-216)||(55546963-55546991)
[»] chr2 (6 HSPs)
chr2 (188-265)||(27317450-27317528)
chr2 (202-274)||(26143577-26143648)
chr2 (188-257)||(30331830-30331900)
chr2 (230-279)||(36534825-36534874)
chr2 (230-274)||(16451180-16451224)
chr2 (188-271)||(42419858-42419942)
[»] chr8 (11 HSPs)
chr8 (178-280)||(32840897-32841000)
chr8 (188-265)||(10758178-10758256)
chr8 (193-265)||(41589657-41589730)
chr8 (178-223)||(43208067-43208112)
chr8 (199-265)||(30251386-30251453)
chr8 (199-265)||(35534545-35534612)
chr8 (187-259)||(12496992-12497065)
chr8 (230-270)||(2487973-2488013)
chr8 (234-270)||(2833322-2833358)
chr8 (230-270)||(8629521-8629561)
chr8 (188-279)||(18591897-18591989)
[»] chr7 (12 HSPs)
chr7 (188-260)||(30748955-30749029)
chr7 (188-265)||(4970713-4970791)
chr7 (185-225)||(2727276-2727316)
chr7 (192-270)||(25670511-25670591)
chr7 (228-271)||(23214919-23214962)
chr7 (188-226)||(19302484-19302522)
chr7 (230-280)||(20526893-20526943)
chr7 (295-329)||(46104337-46104371)
chr7 (230-271)||(20526511-20526552)
chr7 (187-254)||(18765366-18765434)
chr7 (199-274)||(33678842-33678918)
chr7 (230-274)||(44989641-44989685)
[»] chr6 (9 HSPs)
chr6 (193-280)||(2455315-2455403)
chr6 (199-280)||(33832209-33832287)
chr6 (188-224)||(13908353-13908389)
chr6 (234-265)||(18611144-18611175)
chr6 (193-258)||(2455066-2455132)
chr6 (230-280)||(2735125-2735175)
chr6 (220-263)||(836491-836535)
chr6 (188-224)||(4308786-4308822)
chr6 (230-274)||(9559503-9559547)
[»] chr1 (11 HSPs)
chr1 (188-265)||(2295167-2295245)
chr1 (233-270)||(42336680-42336717)
chr1 (188-264)||(50644176-50644253)
chr1 (199-274)||(39976142-39976218)
chr1 (199-257)||(6557051-6557110)
chr1 (199-276)||(36514608-36514686)
chr1 (295-328)||(38867866-38867899)
chr1 (188-270)||(51929383-51929467)
chr1 (234-270)||(4481995-4482031)
chr1 (180-224)||(29793611-29793655)
chr1 (199-254)||(33204326-33204382)
[»] chr5 (8 HSPs)
chr5 (198-270)||(15246899-15246972)
chr5 (199-257)||(15015922-15015981)
chr5 (188-274)||(41419381-41419468)
chr5 (193-274)||(11064728-11064810)
chr5 (199-279)||(11700219-11700300)
chr5 (188-224)||(17369316-17369352)
chr5 (194-253)||(29590557-29590617)
chr5 (188-259)||(32010022-32010094)
[»] chr3 (10 HSPs)
chr3 (188-259)||(18405752-18405824)
chr3 (214-264)||(45264313-45264364)
chr3 (188-218)||(42817143-42817173)
chr3 (178-219)||(28881670-28881711)
chr3 (188-225)||(30657398-30657435)
chr3 (232-265)||(50211805-50211838)
chr3 (230-270)||(25182952-25182992)
chr3 (188-279)||(26878257-26878349)
chr3 (230-270)||(40880913-40880953)
chr3 (194-280)||(42747709-42747797)
[»] scaffold0608 (1 HSPs)
scaffold0608 (234-270)||(9606-9642)


Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 14 - 328
Target Start/End: Original strand, 2236729 - 2237043
Alignment:
Q  14 aggactgataggaagttaaaggagcttgatacagaaagcagtaagaataatccaattgttggtgtttttaataacttggtaaggcgtaatttgatcttgg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2236729 aggactgataggaagttaaaggagcttgatacagaaagcagtaagaataatccaattgttggtgtttttaataacttggtaaggcgtaatttgatcttgg 2236828  T
Q  114 aaaaagagaggctagaaaaagttgaggaaactttcaaggctcttgatctcaataaggtaattaattagggtcaatttgaattgatttatttgaacttatc 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2236829 aaaaagagaggctagaaaaagttgaggaaactttcaaggctcttgatctcaataaggtaattaattagggtcaattcgaattgatttatttgaacttatc 2236928  T
Q  214 tactgacataagtctatgagactgtttgagataacttatgaaaacaacttatcacattgtttataaggagtttattttttgtaagttcttcaagataact 313  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2236929 tactgacataagtttatgagactgtttgagataacttatgaaaacaacttatcacattgtttataaggagtttattatttgtaagttcttcaagataact 2237028  T
Q  314 tatgaaaatagttta 328  Q
    |||||||||||||||    
T  2237029 tatgaaaatagttta 2237043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 259
Target Start/End: Complemental strand, 40174701 - 40174634
Alignment:
Q  193 attgatttatttgaacttatctactgacataagtcta-tgagactgtttgagataacttatgaaaaca 259  Q
    ||||||||||||||  ||||||||| |||||||| |  |||||||||||| |||||||||||||||||    
T  40174701 attgatttatttgagtttatctactaacataagttttgtgagactgtttgggataacttatgaaaaca 40174634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 269
Target Start/End: Original strand, 21731577 - 21731659
Alignment:
Q  188 tttgaattgatttatttgaacttatctactgacataagtcta-tgagactgtttgagataacttatgaaaacaacttatcaca 269  Q
    |||| |||| ||||||||| | ||||||||||||||||| |  ||||| |||||| || |||||||||||||| |||||||||    
T  21731577 tttggattggtttatttgagcatatctactgacataagttttgtgagattgtttgggagaacttatgaaaacagcttatcaca 21731659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 270
Target Start/End: Original strand, 8328030 - 8328124
Alignment:
Q  178 ttagggtcaatttgaattgatttatttgaacttatctactgacataag--tctatgagactgtttgagataacttatgaaaacaacttatcacat 270  Q
    |||||| | |||||||||||| ||||||| |||||||| || ||||||    ||||||||||||||  ||| ||||||||||||| |||| ||||    
T  8328030 ttagggcctatttgaattgatgtatttgagcttatctattggcataagcacttatgagactgtttggaatagcttatgaaaacaatttatgacat 8328124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 226
Target Start/End: Complemental strand, 20656189 - 20656150
Alignment:
Q  187 atttgaattgatttatttgaacttatctactgacataagt 226  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  20656189 atttgaattgatttatttgagcttatctactgtcataagt 20656150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 270
Target Start/End: Complemental strand, 2996711 - 2996638
Alignment:
Q  199 ttatttgaacttatctactgacataagtc--tatgagactgtttgagataacttatgaaaacaacttatcacat 270  Q
    |||||||||||||| || |||||||||    | ||||||||||||||| | |||||||||||||||||| ||||    
T  2996711 ttatttgaacttatttattgacataagcacttttgagactgtttgagagagcttatgaaaacaacttatgacat 2996638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 15173224 - 15173262
Alignment:
Q  188 tttgaattgatttatttgaacttatctactgacataagt 226  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  15173224 tttggattgacttatttgaacttatctactgacataagt 15173262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 280
Target Start/End: Original strand, 17822797 - 17822879
Alignment:
Q  199 ttatttgaacttatctactgacataag-tctatgagactgtttgagataacttatgaaaacaacttatcacattgtttataag 280  Q
    |||||||| |||||||||||||||||| ||| ||||||| |||  || ||| |||||||||| ||||| ||||| || |||||    
T  17822797 ttatttgagcttatctactgacataagttctgtgagactatttaggagaacatatgaaaacagcttatgacatttttcataag 17822879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 265
Target Start/End: Original strand, 27329997 - 27330075
Alignment:
Q  188 tttgaattgatttatttgaacttatctactgacataagtcta-tgagactgtttgagataacttatgaaaacaacttat 265  Q
    |||||||||  |||||| | |||||||||| |||||||| || ||||| |||||||||  | |||||||||||||||||    
T  27329997 tttgaattggcttatttaagcttatctacttacataagtttaatgagattgtttgagaggatttatgaaaacaacttat 27330075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 264
Target Start/End: Original strand, 49940088 - 49940165
Alignment:
Q  188 tttgaattgatttatttgaacttatctactgacataagtcta-tgagactgtttgagataacttatgaaaacaactta 264  Q
    |||| ||||| |||||||| |||| || || |||||||| |  ||||||||||||||| |||||||||||||| ||||    
T  49940088 tttggattgacttatttgagcttacctgctaacataagttttgtgagactgtttgagagaacttatgaaaacagctta 49940165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 280
Target Start/End: Original strand, 52315118 - 52315211
Alignment:
Q  188 tttgaattgatttatttgaacttatctactgacataagtcta-tgagactgtttgagataacttatgaaaacaacttatcacattgtttataag 280  Q
    |||| ||||| ||||||||  |||||||||||| ||||| |  ||||| ||||||  | ||||||| |||||||||||||||||| || |||||    
T  52315118 tttggattgacttatttgagtttatctactgacgtaagttttgtgagattgtttggaagaacttatcaaaacaacttatcacattattcataag 52315211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 280
Target Start/End: Complemental strand, 1706750 - 1706678
Alignment:
Q  209 ttatctactgacataagtcta-tgagactgtttgagataacttatgaaaacaacttatcacattgtttataag 280  Q
    |||||||||||||||||| |  |||||| |||||||| || ||||||||||| |||||  ||||||| |||||    
T  1706750 ttatctactgacataagttttgtgagacggtttgagagaaattatgaaaacagcttatggcattgttcataag 1706678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 31642294 - 31642258
Alignment:
Q  234 actgtttgagataacttatgaaaacaacttatcacat 270  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  31642294 actgtttgagagaacttatgaaaacaacttatgacat 31642258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 55546963 - 55546991
Alignment:
Q  188 tttgaattgatttatttgaacttatctac 216  Q
    |||||||||||||||||||||||||||||    
T  55546963 tttgaattgatttatttgaacttatctac 55546991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 188 - 265
Target Start/End: Complemental strand, 27317528 - 27317450
Alignment:
Q  188 tttgaattgatttatttgaacttatctactgacataagtct-atgagactgtttgagataacttatgaaaacaacttat 265  Q
    |||| ||||| |||||||| ||||||||| ||||||||| | |||||||||||||||| ||||||||||||||||||||    
T  27317528 tttggattgacttatttgagcttatctaccgacataagttttatgagactgtttgagagaacttatgaaaacaacttat 27317450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 274
Target Start/End: Original strand, 26143577 - 26143648
Alignment:
Q  202 tttgaacttatctactgacataagtctatgagactgtttgagataacttatgaaaacaacttatcacattgtt 274  Q
    ||||| ||||||||||||||||| | | |||||||||||| || |||||| |||||||||||||  |||||||    
T  26143577 tttgagcttatctactgacataaattt-tgagactgtttgggagaacttacgaaaacaacttatgtcattgtt 26143648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 257
Target Start/End: Complemental strand, 30331900 - 30331830
Alignment:
Q  188 tttgaattgatttatttgaacttatctactgacataag-tctatgagactgtttgagataacttatgaaaa 257  Q
    |||| ||||| |||||| | |||||||||||||||||| | | |||||||||||| || ||||||||||||    
T  30331900 tttggattgacttatttcagcttatctactgacataagttttgtgagactgtttgggagaacttatgaaaa 30331830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 36534874 - 36534825
Alignment:
Q  230 tgagactgtttgagataacttatgaaaacaacttatcacattgtttataa 279  Q
    |||||||||||| ||||||||||||||||| ||||| | |||||| ||||    
T  36534874 tgagactgtttgggataacttatgaaaacagcttataaaattgttcataa 36534825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 16451224 - 16451180
Alignment:
Q  230 tgagactgtttgagataacttatgaaaacaacttatcacattgtt 274  Q
    |||||| ||||| || |||||||||||||||||||| ||||||||    
T  16451224 tgagaccgtttgggagaacttatgaaaacaacttatgacattgtt 16451180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 42419942 - 42419858
Alignment:
Q  188 tttgaattgatttatttgaacttatctactgacataagtctat-gagactgtttgagataacttatgaaaacaacttatcacatt 271  Q
    |||| ||||| ||||||||  |||||| ||||||||||| | | ||||||||||| || |||||| ||||||| ||||| |||||    
T  42419942 tttggattgacttatttgagtttatcttctgacataagttttttgagactgtttgggagaacttacgaaaacagcttatgacatt 42419858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 280
Target Start/End: Original strand, 32840897 - 32841000
Alignment:
Q  178 ttagggtcaatttgaattgatttatttgaacttatctactgacataagtctat-gagactgtttgagataacttatgaaaacaacttatcacattgttta 276  Q
    |||||||| ||||||||||| ||| |||| |||||||||| ||| |||| |   ||||||||||| || |||||||||||||||||||| |||||||| |    
T  32840897 ttagggtctatttgaattgacttacttgagcttatctactcacacaagttttgcgagactgtttgggagaacttatgaaaacaacttatgacattgttca 32840996  T
Q  277 taag 280  Q
    ||||    
T  32840997 taag 32841000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 265
Target Start/End: Original strand, 10758178 - 10758256
Alignment:
Q  188 tttgaattgatttatttgaacttatctactgacataag-tctatgagactgtttgagataacttatgaaaacaacttat 265  Q
    |||||||||| |||||||||||||||| || ||||||| | | ||||||||||||| | || ||||||||||| |||||    
T  10758178 tttgaattgacttatttgaacttatctgctaacataagttttgtgagactgtttgatagaatttatgaaaacagcttat 10758256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 41589730 - 41589657
Alignment:
Q  193 attgatttatttgaacttatctactgacataag-tctatgagactgtttgagataacttatgaaaacaacttat 265  Q
    |||| ||||||||| ||| |||||||||||||| | | |||||||||||  || ||||||||||||||||||||    
T  41589730 attggtttatttgagcttgtctactgacataagctttttgagactgttttggagaacttatgaaaacaacttat 41589657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 43208067 - 43208112
Alignment:
Q  178 ttagggtcaatttgaattgatttatttgaacttatctactgacata 223  Q
    |||||||| || |||||||| |||||||||||||||||||||||||    
T  43208067 ttagggtctatatgaattgacttatttgaacttatctactgacata 43208112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 265
Target Start/End: Original strand, 30251386 - 30251453
Alignment:
Q  199 ttatttgaacttatctactgacataagtct-atgagactgtttgagataacttatgaaaacaacttat 265  Q
    |||||||| ||||||||||||||||||| |  |||||||||||| || |||||| ||||||| |||||    
T  30251386 ttatttgagcttatctactgacataagtttcgtgagactgtttgggagaacttacgaaaacagcttat 30251453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 265
Target Start/End: Original strand, 35534545 - 35534612
Alignment:
Q  199 ttatttgaacttatctactgacataagtcta-tgagactgtttgagataacttatgaaaacaacttat 265  Q
    |||||||| |||||||||| |||||||| |  ||||||||||||||| ||||| |||||||| |||||    
T  35534545 ttatttgagcttatctactaacataagttttgtgagactgtttgagagaacttgtgaaaacagcttat 35534612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 12496992 - 12497065
Alignment:
Q  187 atttgaattgatttatttgaacttatctactgacataag-tctatgagactgtttgagataacttatgaaaaca 259  Q
    ||||| |||||||||||||| ||||||| ||| |||||| | | ||||||||||||||| ||||| | ||||||    
T  12496992 atttggattgatttatttgagcttatctcctggcataagttttgtgagactgtttgagagaacttctaaaaaca 12497065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 2487973 - 2488013
Alignment:
Q  230 tgagactgtttgagataacttatgaaaacaacttatcacat 270  Q
    |||||||||||| || |||||||||||||||||||| ||||    
T  2487973 tgagactgtttgggagaacttatgaaaacaacttataacat 2488013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 2833322 - 2833358
Alignment:
Q  234 actgtttgagataacttatgaaaacaacttatcacat 270  Q
    ||||||||  |||||||||||||||||||||||||||    
T  2833322 actgtttggcataacttatgaaaacaacttatcacat 2833358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 8629561 - 8629521
Alignment:
Q  230 tgagactgtttgagataacttatgaaaacaacttatcacat 270  Q
    |||||| |||||||| |||||||||||||||||||| ||||    
T  8629561 tgagaccgtttgagagaacttatgaaaacaacttatgacat 8629521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 279
Target Start/End: Original strand, 18591897 - 18591989
Alignment:
Q  188 tttgaattgatttatttgaacttatctactgacataagtct-atgagactgtttgagataacttatgaaaacaacttatcacattgtttataa 279  Q
    ||||||||| |||| |||| |||||||| ||  |||||| | ||||||||||||| || ||||||| | |||||||||  | |||||||||||    
T  18591897 tttgaattggtttaattgagcttatctattggtataagttttatgagactgtttgggagaacttattataacaacttacgaaattgtttataa 18591989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 188 - 260
Target Start/End: Original strand, 30748955 - 30749029
Alignment:
Q  188 tttgaattgatttatttgaacttatctactgacataagtc--tatgagactgtttgagataacttatgaaaacaa 260  Q
    |||||||||| |||||||| |||||||||||||||||| |  | ||||||||||||||| |||||||||||||||    
T  30748955 tttgaattgagttatttgagcttatctactgacataagccaatgtgagactgtttgagagaacttatgaaaacaa 30749029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 265
Target Start/End: Original strand, 4970713 - 4970791
Alignment:
Q  188 tttgaattgatttatttgaacttatctactgacataagtcta-tgagactgtttgagataacttatgaaaacaacttat 265  Q
    |||| ||||| |||||||| |||||||  ||||||||||||  |||||||||||| || ||||||||||||||||||||    
T  4970713 tttggattgacttatttgagcttatctcgtgacataagtcttgtgagactgtttgggagaacttatgaaaacaacttat 4970791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 2727276 - 2727316
Alignment:
Q  185 caatttgaattgatttatttgaacttatctactgacataag 225  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  2727276 caatttggattgatttatttgaacttatctactgacataag 2727316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 192 - 270
Target Start/End: Original strand, 25670511 - 25670591
Alignment:
Q  192 aattgatttatttgaacttatctactgacataag-tcta-tgagactgtttgagataacttatgaaaacaacttatcacat 270  Q
    |||||| ||| |||| |||||||| ||||||||| |||  ||||||||||||||| |||||||||||||||||||| ||||    
T  25670511 aattgacttacttgagcttatctattgacataagctcttgtgagactgtttgagaaaacttatgaaaacaacttatgacat 25670591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 23214962 - 23214919
Alignment:
Q  228 tatgagactgtttgagataacttatgaaaacaacttatcacatt 271  Q
    ||||||||||||||||| || ||||||||||||||||| |||||    
T  23214962 tatgagactgtttgagagaatttatgaaaacaacttatgacatt 23214919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 19302484 - 19302522
Alignment:
Q  188 tttgaattgatttatttgaacttatctactgacataagt 226  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  19302484 tttgaattgacttatttgagcttatctactgacataagt 19302522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 280
Target Start/End: Original strand, 20526893 - 20526943
Alignment:
Q  230 tgagactgtttgagataacttatgaaaacaacttatcacattgtttataag 280  Q
    ||||||||||||||| |||| ||||||||| ||||| | ||||||||||||    
T  20526893 tgagactgtttgagagaactgatgaaaacagcttatgagattgtttataag 20526943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 329
Target Start/End: Original strand, 46104337 - 46104371
Alignment:
Q  295 taagttcttcaagataacttatgaaaatagtttat 329  Q
    ||||||||||||||||||||||||||| |||||||    
T  46104337 taagttcttcaagataacttatgaaaacagtttat 46104371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 20526552 - 20526511
Alignment:
Q  230 tgagactgtttgagataacttatgaaaacaacttatcacatt 271  Q
    ||||||||||||||| ||||||||||||||  ||||||||||    
T  20526552 tgagactgtttgagagaacttatgaaaacagtttatcacatt 20526511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 18765434 - 18765366
Alignment:
Q  187 atttgaattgatttatttgaacttatctactgacataagtcta-tgagactgtttgagataacttatga 254  Q
    ||||| |||| ||||||||| |||||||| |||||||||| |  |||||||||||| || |||||||||    
T  18765434 atttggattgctttatttgagcttatctattgacataagttttgtgagactgtttgggagaacttatga 18765366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 274
Target Start/End: Complemental strand, 33678918 - 33678842
Alignment:
Q  199 ttatttgaacttatctactgacataagtcta-tgagactgtttgagataacttatgaaaacaacttatcacattgtt 274  Q
    |||||| ||||||||||||  ||||||| |  ||||||  |||| || |||||||||||||||||||| ||||||||    
T  33678918 ttatttaaacttatctacttgcataagttttgtgagacaatttgggagaacttatgaaaacaacttataacattgtt 33678842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 44989641 - 44989685
Alignment:
Q  230 tgagactgtttgagataacttatgaaaacaacttatcacattgtt 274  Q
    |||||||||||| || |||||||||||||||||| | ||||||||    
T  44989641 tgagactgtttgggaaaacttatgaaaacaacttctgacattgtt 44989685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 280
Target Start/End: Complemental strand, 2455403 - 2455315
Alignment:
Q  193 attgatttatttgaacttatctactgacataagtcta-tgagactgtttgagataacttatgaaaacaacttatcacattgtttataag 280  Q
    |||| ||||||||| |||||||||  |||||||| |  ||| ||| ||||||| |||||||||||||||||||| ||||||||||||||    
T  2455403 attggtttatttgagcttatctacaaacataagtttggtgaaactatttgagagaacttatgaaaacaacttattacattgtttataag 2455315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 280
Target Start/End: Original strand, 33832209 - 33832287
Alignment:
Q  199 ttatttgaacttatctactgacataagtctatgagactgtttgagataacttatgaaaacaacttatcacattgtttataag 280  Q
    ||||||||||||||||| || ||||||| |  ||| |||||| ||| |||||||||||||||||||| ||| ||||||||||    
T  33832209 ttatttgaacttatctaatgtcataagttt--gagtctgtttaagagaacttatgaaaacaacttatgaca-tgtttataag 33832287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 13908389 - 13908353
Alignment:
Q  188 tttgaattgatttatttgaacttatctactgacataa 224  Q
    |||||||||| ||||||||||||||||||||||||||    
T  13908389 tttgaattgacttatttgaacttatctactgacataa 13908353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 265
Target Start/End: Complemental strand, 18611175 - 18611144
Alignment:
Q  234 actgtttgagataacttatgaaaacaacttat 265  Q
    ||||||||||||||||||||||||||||||||    
T  18611175 actgtttgagataacttatgaaaacaacttat 18611144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 258
Target Start/End: Complemental strand, 2455132 - 2455066
Alignment:
Q  193 attgatttatttgaacttatctactgacataag-tctatgagactgtttgagataacttatgaaaac 258  Q
    |||| |||||||||||||||||||| ||||||| | | |||||||||||| || ||||| |||||||    
T  2455132 attggtttatttgaacttatctactaacataagttttgtgagactgtttgggagaacttctgaaaac 2455066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 280
Target Start/End: Complemental strand, 2735175 - 2735125
Alignment:
Q  230 tgagactgtttgagataacttatgaaaacaacttatcacattgtttataag 280  Q
    |||||||||||||||||||||||||||||  ||||| ||||| || |||||    
T  2735175 tgagactgtttgagataacttatgaaaacggcttatgacatttttcataag 2735125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 263
Target Start/End: Original strand, 836491 - 836535
Alignment:
Q  220 cataagtct-atgagactgtttgagataacttatgaaaacaactt 263  Q
    ||||||||| ||||||||||||| || ||||||||||||||||||    
T  836491 cataagtcttatgagactgtttgggagaacttatgaaaacaactt 836535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 4308822 - 4308786
Alignment:
Q  188 tttgaattgatttatttgaacttatctactgacataa 224  Q
    ||||||||||||||||| | |||||||||||||||||    
T  4308822 tttgaattgatttattttagcttatctactgacataa 4308786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 9559503 - 9559547
Alignment:
Q  230 tgagactgtttgagataacttatgaaaacaacttatcacattgtt 274  Q
    ||||||| |||| || |||||||||||||||||||| ||||||||    
T  9559503 tgagactatttgggagaacttatgaaaacaacttatgacattgtt 9559547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 265
Target Start/End: Complemental strand, 2295245 - 2295167
Alignment:
Q  188 tttgaattgatttatttgaacttatctactgacataagtcta-tgagactgtttgagataacttatgaaaacaacttat 265  Q
    |||||||||  |||||||| ||||||||||| ||||||| |  |||||||||||| || |||||||||||||| |||||    
T  2295245 tttgaattggcttatttgagcttatctactggcataagttttgtgagactgtttgggagaacttatgaaaacagcttat 2295167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 42336717 - 42336680
Alignment:
Q  233 gactgtttgagataacttatgaaaacaacttatcacat 270  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  42336717 gactgtttgagataacttatgaaaacaacttatgacat 42336680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 264
Target Start/End: Original strand, 50644176 - 50644253
Alignment:
Q  188 tttgaattgatttatttgaacttatctactgacataagtcta-tgagactgtttgagataacttatgaaaacaactta 264  Q
    |||| ||||| |||||||| |||||||||| ||||| || |  |||||||||||| || |||||||||||||||||||    
T  50644176 tttggattgacttatttgagcttatctactaacatatgttttgtgagactgtttgggagaacttatgaaaacaactta 50644253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 274
Target Start/End: Original strand, 39976142 - 39976218
Alignment:
Q  199 ttatttgaacttatctactgacataagtcta-tgagactgtttgagataacttatgaaaacaacttatcacattgtt 274  Q
    ||||||||  |||||||||||||||||| |  ||| ||||||||||| |||||||||||| || |||| ||||||||    
T  39976142 ttatttgagattatctactgacataagttttgtgaaactgtttgagagaacttatgaaaataatttatgacattgtt 39976218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 257
Target Start/End: Complemental strand, 6557110 - 6557051
Alignment:
Q  199 ttatttgaacttatctactgacataag-tctatgagactgtttgagataacttatgaaaa 257  Q
    ||||||||||||||||||| ||||||| | | ||||||| ||||||| ||||||||||||    
T  6557110 ttatttgaacttatctactaacataagttttgtgagactatttgagagaacttatgaaaa 6557051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 276
Target Start/End: Original strand, 36514608 - 36514686
Alignment:
Q  199 ttatttgaacttatctactgacataagtctat-gagactgtttgagataacttatgaaaacaacttatcacattgttta 276  Q
    ||||||||  |||||||||| ||||||| | | ||||||||| | || |||||||||||| ||||||| ||||||||||    
T  36514608 ttatttgagtttatctactgccataagttttttgagactgttagggagaacttatgaaaataacttatgacattgttta 36514686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 328
Target Start/End: Original strand, 38867866 - 38867899
Alignment:
Q  295 taagttcttcaagataacttatgaaaatagttta 328  Q
    ||||||||||||||||||||||||||| ||||||    
T  38867866 taagttcttcaagataacttatgaaaacagttta 38867899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 270
Target Start/End: Original strand, 51929383 - 51929467
Alignment:
Q  188 tttgaattgatttatttgaacttatctactgacataag--tctatgagactgtttgagataacttatgaaaacaacttatcacat 270  Q
    |||| ||||| || ||||| ||||||||||||||||||   || ||| ||||||| ||| |||||||||||||| ||||| ||||    
T  51929383 tttggattgacttttttgagcttatctactgacataagcacctgtgacactgtttaagagaacttatgaaaacagcttatgacat 51929467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 4482031 - 4481995
Alignment:
Q  234 actgtttgagataacttatgaaaacaacttatcacat 270  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  4482031 actgtttgagagaacttatgaaaacaacttattacat 4481995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 29793611 - 29793655
Alignment:
Q  180 agggtcaatttgaattgatttatttgaacttatctactgacataa 224  Q
    |||| ||||||| ||||| |||||||| |||||||||||||||||    
T  29793611 agggccaatttgtattgacttatttgagcttatctactgacataa 29793655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 33204326 - 33204382
Alignment:
Q  199 ttatttgaacttatctactgacataag-tctatgagactgtttgagataacttatga 254  Q
    |||||||| |||||||||||||||||| | | |||||||||||| || |||||||||    
T  33204326 ttatttgagcttatctactgacataagttttgtgagactgtttgggagaacttatga 33204382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 270
Target Start/End: Complemental strand, 15246972 - 15246899
Alignment:
Q  198 tttatttgaacttatctactgacataag-tctatgagactgtttgagataacttatgaaaacaacttatcacat 270  Q
    ||||||||| |||||||||||||||||| | ||| ||| |||||| || ||||||||||| |||||||| ||||    
T  15246972 tttatttgagcttatctactgacataagttttattagaatgtttgggagaacttatgaaagcaacttatgacat 15246899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 257
Target Start/End: Complemental strand, 15015981 - 15015922
Alignment:
Q  199 ttatttgaacttatctactgacataag-tctatgagactgtttgagataacttatgaaaa 257  Q
    |||||||| |||||||||||||||||| | | |||||||||||| || ||||||||||||    
T  15015981 ttatttgagcttatctactgacataagctttgtgagactgtttgggagaacttatgaaaa 15015922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 41419468 - 41419381
Alignment:
Q  188 tttgaattgatttatttgaacttatctactgacat-aagtctatgagactgtttgagataacttatgaaaacaacttatcacattgtt 274  Q
    |||| ||||| |||||||| || |||||||||||| || | | ||||| |||||| |||||||| |||||||| ||||| ||||||||    
T  41419468 tttggattgacttatttgagctaatctactgacataaattttgtgagattgtttgggataacttgtgaaaacagcttatgacattgtt 41419381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 274
Target Start/End: Complemental strand, 11064810 - 11064728
Alignment:
Q  193 attgatttatttgaacttatctactgacataagtcta-tgagactgtttgagataacttatgaaaacaacttatcacattgtt 274  Q
    ||||||||||||||  ||||||||  |||||||| |  ||||| ||||||||| |||||||||||| | ||||| ||||||||    
T  11064810 attgatttatttgagtttatctaccaacataagttttgtgagattgtttgagagaacttatgaaaatagcttatgacattgtt 11064728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 279
Target Start/End: Complemental strand, 11700300 - 11700219
Alignment:
Q  199 ttatttgaacttatctactgacataagtcta-tgagactgtttgagataacttatgaaaacaacttatcacattgtttataa 279  Q
    |||||||| |||||| |||| ||||||| |  ||||||||||| | | |||||||| ||||||||||| |||||||| ||||    
T  11700300 ttatttgagcttatccactggcataagttttgtgagactgtttcacagaacttatggaaacaacttatgacattgttcataa 11700219  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 17369352 - 17369316
Alignment:
Q  188 tttgaattgatttatttgaacttatctactgacataa 224  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  17369352 tttggattgacttatttgaacttatctactgacataa 17369316  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 253
Target Start/End: Original strand, 29590557 - 29590617
Alignment:
Q  194 ttgatttatttgaacttatctactgacataagt-ctatgagactgtttgagataacttatg 253  Q
    |||| |||||||| ||||||||| ||||||||  ||||||||||||||||| || ||||||    
T  29590557 ttgacttatttgagcttatctacagacataagcactatgagactgtttgagttagcttatg 29590617  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 259
Target Start/End: Complemental strand, 32010094 - 32010022
Alignment:
Q  188 tttgaattgatttatttgaacttatctactgacataagtctatg-agactgtttgagataacttatgaaaaca 259  Q
    |||| ||||| ||||||||  ||||||||| |||||||| | |  ||||||||||||| ||||||||||||||    
T  32010094 tttggattgacttatttgagtttatctactcacataagtttcttcagactgtttgagagaacttatgaaaaca 32010022  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 18405752 - 18405824
Alignment:
Q  188 tttgaattgatttatttgaacttatctactgacataag-tctatgagactgtttgagataacttatgaaaaca 259  Q
    |||| |||| ||||||||| |||||||||||||||||| | | ||||||||||||  | ||||||||||||||    
T  18405752 tttggattggtttatttgagcttatctactgacataagttttgtgagactgtttgcaagaacttatgaaaaca 18405824  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 264
Target Start/End: Original strand, 45264313 - 45264364
Alignment:
Q  214 tactgacataagtcta-tgagactgtttgagataacttatgaaaacaactta 264  Q
    ||||||||||||| || |||||||| |||||| |||||||||||||||||||    
T  45264313 tactgacataagtttagtgagactggttgagagaacttatgaaaacaactta 45264364  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 218
Target Start/End: Original strand, 42817143 - 42817173
Alignment:
Q  188 tttgaattgatttatttgaacttatctactg 218  Q
    |||||||||||||||||||||||||||||||    
T  42817143 tttgaattgatttatttgaacttatctactg 42817173  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 28881670 - 28881711
Alignment:
Q  178 ttagggtcaatttgaattgatttatttgaacttatctactga 219  Q
    |||||||| |||||| ||||||||||||| ||||||||||||    
T  28881670 ttagggtctatttgagttgatttatttgagcttatctactga 28881711  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 30657435 - 30657398
Alignment:
Q  188 tttgaattgatttatttgaacttatctactgacataag 225  Q
    |||||||||||||||||||  |||||||||||||||||    
T  30657435 tttgaattgatttatttgagtttatctactgacataag 30657398  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Complemental strand, 50211838 - 50211805
Alignment:
Q  232 agactgtttgagataacttatgaaaacaacttat 265  Q
    ||||||||||||| ||||||||||||||||||||    
T  50211838 agactgtttgagagaacttatgaaaacaacttat 50211805  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 25182952 - 25182992
Alignment:
Q  230 tgagactgtttgagataacttatgaaaacaacttatcacat 270  Q
    ||||||||||||||| | |||||||||||||||||| ||||    
T  25182952 tgagactgtttgagagagcttatgaaaacaacttatgacat 25182992  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 279
Target Start/End: Complemental strand, 26878349 - 26878257
Alignment:
Q  188 tttgaattgatttatttgaacttatctactgacataagtcta-tgagactgtttgagataacttatgaaaacaacttatcacattgtttataa 279  Q
    |||||||||  ||||| || |||||||||||||||||||    ||| ||||||||||| ||||| |||||| | ||||| |||||||| ||||    
T  26878349 tttgaattggcttattcgagcttatctactgacataagttgcgtgaaactgtttgagagaacttgtgaaaatagcttatgacattgttcataa 26878257  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 40880913 - 40880953
Alignment:
Q  230 tgagactgtttgagataacttatgaaaacaacttatcacat 270  Q
    ||||||||||||||| | |||||||||||||||||| ||||    
T  40880913 tgagactgtttgagagagcttatgaaaacaacttatgacat 40880953  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 280
Target Start/End: Original strand, 42747709 - 42747797
Alignment:
Q  194 ttgatttatttgaacttatctactgacataagtcta-tgagactgtttgagataacttatgaaaacaac-ttatcacattgtttataag 280  Q
    |||| ||||||||  |||||||||  ||||||| |  |||||||||||  || |||||||||||||||| |||| ||||||||||||||    
T  42747709 ttgacttatttgagtttatctacttccataagtattgtgagactgtttttgagaacttatgaaaacaactttatgacattgtttataag 42747797  T

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Target: scaffold0608 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 9606 - 9642
Alignment:
Q  234 actgtttgagataacttatgaaaacaacttatcacat 270  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  9606 actgtttgagagaacttatgaaaacaacttattacat 9642  T

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