View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10818_low_16 (Length: 342)

Name: NF10818_low_16
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10818_low_16
NF10818_low_16
[»] chr8 (20 HSPs)
chr8 (11-332)||(36472857-36473178)
chr8 (14-142)||(15561912-15562040)
chr8 (156-330)||(36463795-36463970)
chr8 (11-141)||(29314069-29314199)
chr8 (24-141)||(41322612-41322729)
chr8 (15-141)||(2001721-2001847)
chr8 (11-141)||(39112718-39112848)
chr8 (39-141)||(33888946-33889048)
chr8 (12-139)||(11653712-11653838)
chr8 (12-84)||(34392179-34392251)
chr8 (61-141)||(37919508-37919588)
chr8 (11-112)||(11643353-11643455)
chr8 (33-141)||(1005681-1005792)
chr8 (11-85)||(4851803-4851877)
chr8 (95-141)||(4824296-4824342)
chr8 (108-141)||(1416048-1416081)
chr8 (41-95)||(5549035-5549089)
chr8 (42-76)||(37919603-37919637)
chr8 (44-77)||(8551592-8551625)
chr8 (104-141)||(13357629-13357666)
[»] chr4 (19 HSPs)
chr4 (11-143)||(54358182-54358314)
chr4 (24-141)||(17847541-17847658)
chr4 (11-141)||(18375390-18375519)
chr4 (11-140)||(24683146-24683275)
chr4 (12-140)||(37674000-37674128)
chr4 (11-141)||(23348112-23348245)
chr4 (12-141)||(4512161-4512291)
chr4 (11-141)||(41633287-41633416)
chr4 (24-140)||(41878599-41878715)
chr4 (12-141)||(47838942-47839070)
chr4 (11-112)||(26179238-26179339)
chr4 (11-141)||(54021241-54021374)
chr4 (56-143)||(41497888-41497977)
chr4 (26-84)||(47281588-47281646)
chr4 (99-141)||(52726030-52726072)
chr4 (95-137)||(4098534-4098576)
chr4 (95-137)||(18375543-18375585)
chr4 (83-132)||(4098483-4098532)
chr4 (106-139)||(47282226-47282259)
[»] chr1 (20 HSPs)
chr1 (11-141)||(31032696-31032826)
chr1 (11-132)||(1270241-1270362)
chr1 (11-140)||(47550861-47550990)
chr1 (14-141)||(42480194-42480323)
chr1 (25-130)||(9098579-9098684)
chr1 (11-132)||(29095530-29095651)
chr1 (24-141)||(34475982-34476099)
chr1 (11-141)||(16254924-16255054)
chr1 (14-141)||(20809020-20809147)
chr1 (30-141)||(45010288-45010399)
chr1 (14-141)||(44714807-44714934)
chr1 (11-126)||(2958710-2958820)
chr1 (34-146)||(4624438-4624543)
chr1 (12-139)||(34808007-34808134)
chr1 (70-138)||(41647356-41647424)
chr1 (15-81)||(24135827-24135893)
chr1 (36-95)||(48148881-48148939)
chr1 (12-66)||(4194837-4194891)
chr1 (95-137)||(29095675-29095717)
chr1 (95-137)||(31032850-31032892)
[»] chr2 (22 HSPs)
chr2 (11-141)||(13686063-13686193)
chr2 (11-137)||(41464902-41465028)
chr2 (24-141)||(28716316-28716433)
chr2 (11-141)||(25414983-25415113)
chr2 (11-141)||(45093148-45093278)
chr2 (11-124)||(3810285-3810398)
chr2 (24-140)||(19899002-19899118)
chr2 (11-141)||(14940986-14941117)
chr2 (11-141)||(35323474-35323604)
chr2 (14-141)||(28429354-28429478)
chr2 (24-140)||(42263914-42264030)
chr2 (11-141)||(35676270-35676406)
chr2 (35-141)||(16058375-16058477)
chr2 (14-141)||(36690818-36690946)
chr2 (11-120)||(40126520-40126629)
chr2 (11-83)||(29689277-29689349)
chr2 (96-141)||(2752614-2752659)
chr2 (100-142)||(24413862-24413904)
chr2 (11-81)||(2752692-2752762)
chr2 (95-137)||(13685997-13686039)
chr2 (95-137)||(42263835-42263877)
chr2 (61-97)||(3377049-3377084)
[»] chr3 (20 HSPs)
chr3 (11-139)||(45166296-45166424)
chr3 (11-141)||(521763-521893)
chr3 (11-139)||(38176390-38176518)
chr3 (11-141)||(50612873-50613003)
chr3 (11-141)||(23642978-23643108)
chr3 (11-141)||(31788375-31788505)
chr3 (11-141)||(36517584-36517714)
chr3 (11-141)||(39145321-39145451)
chr3 (11-124)||(20912237-20912350)
chr3 (11-141)||(51297022-51297154)
chr3 (11-112)||(1561283-1561384)
chr3 (24-141)||(52546825-52546942)
chr3 (11-141)||(34624486-34624605)
chr3 (24-95)||(22650440-22650511)
chr3 (34-85)||(9496623-9496674)
chr3 (95-137)||(38176542-38176584)
chr3 (95-135)||(1561408-1561448)
chr3 (44-84)||(8325457-8325497)
chr3 (41-85)||(15461641-15461685)
chr3 (97-137)||(45166230-45166270)
[»] chr5 (24 HSPs)
chr5 (24-139)||(37093912-37094027)
chr5 (11-141)||(4391844-4391974)
chr5 (11-141)||(32891244-32891374)
chr5 (12-141)||(8692579-8692708)
chr5 (11-141)||(34286663-34286793)
chr5 (36-141)||(5481447-5481552)
chr5 (11-141)||(3456822-3456949)
chr5 (11-141)||(228093-228223)
chr5 (24-121)||(40925918-40926015)
chr5 (11-114)||(28434271-28434374)
chr5 (19-97)||(6614289-6614367)
chr5 (36-125)||(31644721-31644812)
chr5 (11-89)||(38614231-38614309)
chr5 (11-89)||(11739270-11739348)
chr5 (11-85)||(29223533-29223607)
chr5 (68-141)||(42148957-42149030)
chr5 (97-141)||(43141519-43141563)
chr5 (47-105)||(35672345-35672403)
chr5 (24-102)||(41326486-41326564)
chr5 (40-93)||(16516963-16517016)
chr5 (95-138)||(4391998-4392041)
chr5 (95-137)||(228027-228069)
chr5 (95-137)||(8692512-8692554)
chr5 (95-137)||(32891178-32891220)
[»] chr7 (8 HSPs)
chr7 (11-141)||(23991949-23992079)
chr7 (14-120)||(27425773-27425879)
chr7 (11-141)||(42195447-42195577)
chr7 (32-141)||(8307613-8307723)
chr7 (12-84)||(22326929-22327001)
chr7 (14-104)||(17611915-17612005)
chr7 (12-141)||(25686436-25686563)
chr7 (34-103)||(10485300-10485369)
[»] chr6 (8 HSPs)
chr6 (11-141)||(7646773-7646903)
chr6 (24-127)||(25935591-25935694)
chr6 (11-114)||(29487541-29487644)
chr6 (53-141)||(17366934-17367016)
chr6 (11-77)||(12607123-12607189)
chr6 (65-141)||(12607030-12607107)
chr6 (40-84)||(28898438-28898482)
chr6 (111-141)||(3835318-3835348)
[»] scaffold0002 (2 HSPs)
scaffold0002 (24-140)||(492749-492865)
scaffold0002 (95-137)||(492670-492712)
[»] scaffold0339 (1 HSPs)
scaffold0339 (76-141)||(13378-13442)
[»] scaffold0071 (1 HSPs)
scaffold0071 (41-85)||(507-551)


Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 11 - 332
Target Start/End: Complemental strand, 36473178 - 36472857
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    ||||||||  || |||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  36473178 cactatttgacacaatttaaggaggtgtggctgaaaaataggaagtgaacaaataaatcatgcaattaaaacttaccaattgtgtcttgaaaaattcttg 36473079  T
Q  111 atgctatttttctagagaaataacattttccgtccaacatatatctattttttctaatgaaatatgaaaatgccatgaatgtgtagatttctgttatcga 210  Q
    ||| |||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36473078 atgttatttttctagagaaatagcattttccgtccaacatatattttttttttctaatgaaatatgaaaatgccatgaatgtgtaggtttctgttatcga 36472979  T
Q  211 gaatgtttattggaaggaacttggacttcttttctctgtttggatcatgatacttgcattacagataggaaaagtaagtatatatctcatgagctatata 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36472978 gaatgtttattggaaggaacttggacttcttttctctgtttggatcatgatacttgcattacagataggaaaagtaagtatatatctcatgagctatata 36472879  T
Q  311 ttcaactcaaaattagttgata 332  Q
    ||||||||||||||||||||||    
T  36472878 ttcaactcaaaattagttgata 36472857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 14 - 142
Target Start/End: Complemental strand, 15562040 - 15561912
Alignment:
Q  14 tatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatg 113  Q
    ||||| ||| |||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  15562040 tatttgccacaattcaaggaggtgtggctgaaaaataggaagtgaacaaataaatcatacaattaaaacttgccaactgtatcttgaaaaattcttgatg 15561941  T
Q  114 ctatttttctagagaaataacattttccg 142  Q
    ||||||||||||| ||||| |||||||||    
T  15561940 ctatttttctagataaatagcattttccg 15561912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 156 - 330
Target Start/End: Complemental strand, 36463970 - 36463795
Alignment:
Q  156 tattttttctaatgaaatatgaaaatgccatgaatg--tgtagatttctgttatcgagaatgtttattggaaggaacttggacttcttttctctgtttgg 253  Q
    |||| ||||||||||||| ||||| || |||| |||  || || |||||||||| |||||||||| |||||||||| |||||||||| |||| |||||||    
T  36463970 tattctttctaatgaaatctgaaactgtcatgcatgaatgcaggtttctgttattgagaatgtttcttggaaggaagttggacttctcttctttgtttgg 36463871  T
Q  254 atcatgatacttgcattacagataggaaaagtaagtatatatctcatgagctatatattcaactcaaaattagttga 330  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||| ||||| ||||    
T  36463870 atcatgatacttgcattacagataggaaaagttagtatatatctcatgagctata-actcaactcacaattatttga 36463795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 29314069 - 29314199
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||| ||| |||| ||| ||||||| ||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  29314069 cactatttgccacaatttaaggaggtgtgactgaaaaatagaaagtggacaaataaataatgcaattaaaacttaccaactgtgtcttgaaaaattcttg 29314168  T
Q  111 atgctatttttctagagaaataacattttcc 141  Q
    || |||||||| |||||||||| ||||||||    
T  29314169 atactatttttttagagaaatagcattttcc 29314199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 24 - 141
Target Start/End: Original strand, 41322612 - 41322729
Alignment:
Q  24 aattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttct 123  Q
    |||||||| ||||||||  ||||||||| |||| ||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  41322612 aattcaaggaggtgtggtagaaaaataggaagttaacaattaaatcatgcaattaaaacttgctaactatgtcttgaaaaattcttgatgctatttttct 41322711  T
Q  124 agagaaataacattttcc 141  Q
    ||||||||| ||||||||    
T  41322712 agagaaatagcattttcc 41322729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 2001721 - 2001847
Alignment:
Q  15 atttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgc 114  Q
    |||| ||| |||| ||| ||||||||||| |||||||| ||||||||||||||||||| |||||||||||| || |||||||||||||||   |||||||    
T  2001721 atttgccacaatttaaggaggtgtggctggaaaatagatagtgaacaaataaatcatgtaattaaaacttggcagctgtgtcttgaaaaaaatttgatgc 2001820  T
Q  115 tatttttctagagaaataacattttcc 141  Q
    |||||||||||||||||||||||||||    
T  2001821 tatttttctagagaaataacattttcc 2001847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 39112718 - 39112848
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||   ||     
T  39112718 cactatttgccataattcaaggaggtgcggctgaaaaatagaaagtgaacaaataaatcatccaattaaaatttgccaattgtgtcttgaaaaaaattta 39112817  T
Q  111 atgctatttttctagagaaataacattttcc 141  Q
    ||||||||||||||||||  || ||||||||    
T  39112818 atgctatttttctagagatgtagcattttcc 39112848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 39 - 141
Target Start/End: Original strand, 33888946 - 33889048
Alignment:
Q  39 ggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattt 138  Q
    |||||||||||||  ||||||||||||||| |||||||||||||||| ||  ||| |||||||||||||||||||||||||||||||||||||| |||||    
T  33888946 ggctgaaaaatagggagtgaacaaataaattatgcaattaaaacttgtcagttgtttcttgaaaaattcttgatgctatttttctagagaaatagcattt 33889045  T
Q  139 tcc 141  Q
    |||    
T  33889046 tcc 33889048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 11653838 - 11653712
Alignment:
Q  12 actatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttga 111  Q
    ||||||| ||| |||||||| | |||||||| ||||| || |||||||||||||||||||| |||||||||||| || | ||||||| ||||||||||||    
T  11653838 actatttgccacaattcaaggatgtgtggcttaaaaa-agtaagtgaacaaataaatcatgtaattaaaacttgtcagccgtgtcttaaaaaattcttga 11653740  T
Q  112 tgctatttttctagagaaataacatttt 139  Q
    || ||||||| |||||||||| ||||||    
T  11653739 tgttatttttgtagagaaatagcatttt 11653712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 34392179 - 34392251
Alignment:
Q  12 actatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaactt 84  Q
    ||||||| ||| |||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  34392179 actatttgccacaatttaagaaggtgtggctgaaaaatgaaaagtgaacaaataaatcatgcaattaaaactt 34392251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 141
Target Start/End: Complemental strand, 37919588 - 37919508
Alignment:
Q  61 aaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 141  Q
    |||||||| | |||||||||||||| ||||||||| |||| ||||||||||| ||||||||||||||||||| ||||||||    
T  37919588 aaataaattacgcaattaaaacttgtcaactgtgttttgataaattcttgatactatttttctagagaaatagcattttcc 37919508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 11643353 - 11643455
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgcca-actgtgtcttgaaaaattctt 109  Q
    |||||||||||| |||| ||||| |||| | |||||||||  ||||||||||||||||||| ||||||||| ||||||  ||||||||  ||||||||||    
T  11643353 cactatttaccacaatttaagaaagtgtagttgaaaaatacgaagtgaacaaataaatcatacaattaaaatttgccatgctgtgtctgaaaaaattctt 11643452  T
Q  110 gat 112  Q
    |||    
T  11643453 gat 11643455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 141
Target Start/End: Original strand, 1005681 - 1005792
Alignment:
Q  33 aggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgcca-actgtgtcttgaaaaattcttgatgcta--tttttctagagaa 129  Q
    ||||||| ||||||||||| |||||||||||||||| |||||||||||||||| ||   |||| ||| ||||| | |||||||||  ||||| |||||||    
T  1005681 aggtgtgactgaaaaataggaagtgaacaaataaattatgcaattaaaacttgtcagtttgtgccttaaaaaaattttgatgctatttttttttagagaa 1005780  T
Q  130 ataacattttcc 141  Q
    ||| ||||||||    
T  1005781 atagcattttcc 1005792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 4851803 - 4851877
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttg 85  Q
    |||||||| ||| |||| ||| | ||||||||||||||||| || | ||||||||||||||||||||||||||||    
T  4851803 cactattttccacaatttaaggaagtgtggctgaaaaataggaaataaacaaataaatcatgcaattaaaacttg 4851877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 4824296 - 4824342
Alignment:
Q  95 tcttgaaaaattcttgatgctatttttctagagaaataacattttcc 141  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||    
T  4824296 tcttgaaaaattcttaatgctatttttctagagaaatagcattttcc 4824342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 141
Target Start/End: Complemental strand, 1416081 - 1416048
Alignment:
Q  108 ttgatgctatttttctagagaaataacattttcc 141  Q
    ||||||||||||||||||||||||||||||||||    
T  1416081 ttgatgctatttttctagagaaataacattttcc 1416048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 5549035 - 5549089
Alignment:
Q  41 ctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgt 95  Q
    ||||| |||||  ||||||||||||||||||||||||| | |||| |||||||||    
T  5549035 ctgaacaatagggagtgaacaaataaatcatgcaattataccttgacaactgtgt 5549089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 76
Target Start/End: Complemental strand, 37919637 - 37919603
Alignment:
Q  42 tgaaaaatagaaagtgaacaaataaatcatgcaat 76  Q
    |||||||||| ||||||||||||||||||||||||    
T  37919637 tgaaaaatagtaagtgaacaaataaatcatgcaat 37919603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 8551592 - 8551625
Alignment:
Q  44 aaaaatagaaagtgaacaaataaatcatgcaatt 77  Q
    ||||||||||| ||||||||||||||||||||||    
T  8551592 aaaaatagaaaatgaacaaataaatcatgcaatt 8551625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 13357666 - 13357629
Alignment:
Q  104 attcttgatgctatttttctagagaaataacattttcc 141  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  13357666 attcttgatgctatttttctagataaatagcattttcc 13357629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 54358182 - 54358314
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||| ||| |||| |||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  54358182 cactatttgccacaatttaagggggtgtggctgaaaaataggaagtgaacaaataaatcatgcaattaaaacttgccaactatgtcttgaaaaattcttg 54358281  T
Q  111 atgctatttttctagagaaataacattttccgt 143  Q
    |||||||||||||||||||||||||||||||||    
T  54358282 atgctatttttctagagaaataacattttccgt 54358314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 24 - 141
Target Start/End: Complemental strand, 17847658 - 17847541
Alignment:
Q  24 aattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttct 123  Q
    |||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  17847658 aattcaaggaggtgtgacagaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttcg 17847559  T
Q  124 agagaaataacattttcc 141  Q
    ||||||||||||||||||    
T  17847558 agagaaataacattttcc 17847541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 18375519 - 18375390
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||| ||| |||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  18375519 cactatttgccacaattcaaggaggtgtggctgaaaa-taggaagtgaacaaataaatcatgcaattaaaacttgccagttgtgtcttgaaaaattcttg 18375421  T
Q  111 atgctatttttctagagaaataacattttcc 141  Q
    |||||||||||||||||||||||||||||||    
T  18375420 atgctatttttctagagaaataacattttcc 18375390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 140
Target Start/End: Original strand, 24683146 - 24683275
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||| ||| |||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||    
T  24683146 cactatttgccacaattcaggaaggtgtgactgaaaaataggaagtgaacaaataaatcatgcaattaaaacttatcaagtgtgtcttgaaaaattcttg 24683245  T
Q  111 atgctatttttctagagaaataacattttc 140  Q
    || ||||||||||| |||||||||||||||    
T  24683246 atactatttttctaaagaaataacattttc 24683275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 12 - 140
Target Start/End: Complemental strand, 37674128 - 37674000
Alignment:
Q  12 actatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttga 111  Q
    ||||||||| | |||||||  |||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||   ||||||||||||||||||||    
T  37674128 actatttactacaattcaaagaggtgtggctgaaaaataaaaagttaacaaataaatcatgcaattaaaacttgtcacacgtgtcttgaaaaattcttga 37674029  T
Q  112 tgctatttttctagagaaataacattttc 140  Q
    ||||||||||||||||||||| |||||||    
T  37674028 tgctatttttctagagaaatatcattttc 37674000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 23348245 - 23348112
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaa---agtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattc 107  Q
    ||||||||||||||||||||| ||||||||||||||||||| |   |||||||||||||||||||||||||||||||| |   ||| ||||||||||||     
T  23348245 cactatttaccataattcaaggaggtgtggctgaaaaataggaggaagtgaacaaataaatcatgcaattaaaacttgtcggttgtttcttgaaaaatta 23348146  T
Q  108 ttgatgctatttttctagagaaataacattttcc 141  Q
    ||||||||||||||||||||||||| ||||||||    
T  23348145 ttgatgctatttttctagagaaatagcattttcc 23348112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 12 - 141
Target Start/End: Complemental strand, 4512291 - 4512161
Alignment:
Q  12 actatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttga 111  Q
    ||||||| ||| |||||||| || |||| ||||||||||| |||| ||||||||||| ||||||||||||||||||| ||| || |||||||||||||||    
T  4512291 actatttgccacaattcaaggagatgtgactgaaaaataggaagtaaacaaataaatgatgcaattaaaacttgccacctgagtattgaaaaattcttga 4512192  T
Q  112 tgctat-ttttctagagaaataacattttcc 141  Q
    |||||| ||||||||||||||||||||||||    
T  4512191 tgctattttttctagagaaataacattttcc 4512161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 41633287 - 41633416
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    ||||| || ||| |||||||| ||||||||||||||||||| |||||||||||||||| ||| |||||||| ||| || || ||||||||||||||||||    
T  41633287 cactacttgccacaattcaaggaggtgtggctgaaaaataggaagtgaacaaataaat-atgtaattaaaatttgtcagctttgtcttgaaaaattcttg 41633385  T
Q  111 atgctatttttctagagaaataacattttcc 141  Q
    |||||||||||||||||||||| ||||||||    
T  41633386 atgctatttttctagagaaatagcattttcc 41633416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 41878599 - 41878715
Alignment:
Q  24 aattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttct 123  Q
    ||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||  | |||||||||||||||||||||||||||||||    
T  41878599 aattcaataaggtgtggctgaaaaataggaagtaaacaaataaatcatgcaattaaaacttgtcagttatgtcttgaaaaattcttgatgctatttttct 41878698  T
Q  124 agagaaataacattttc 140  Q
    | | ||||| |||||||    
T  41878699 aaataaatagcattttc 41878715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 12 - 141
Target Start/End: Complemental strand, 47839070 - 47838942
Alignment:
Q  12 actatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttga 111  Q
    ||||||| ||| |||| ||| ||||||||| |||||||||||| |||||||| | |||||||||||||| ||  ||| |||||||||| |||||||||||    
T  47839070 actatttgccacaatttaaggaggtgtggccgaaaaatagaaaatgaacaaaaacatcatgcaattaaatctcaccagctgtgtcttg-aaaattcttga 47838972  T
Q  112 tgctatttttctagagaaataacattttcc 141  Q
    |||||||||| |||||||||| ||| ||||    
T  47838971 tgctatttttatagagaaatagcatgttcc 47838942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 26179339 - 26179238
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    ||||||||| || |||||||| ||||||||||||||||||| |||||||||||||||||||  |||| ||||||| || |||||| || |||||||||||    
T  26179339 cactatttaacacaattcaaggaggtgtggctgaaaaataggaagtgaacaaataaatcatcaaattgaaacttgacagctgtgttttaaaaaattcttg 26179240  T
Q  111 at 112  Q
    ||    
T  26179239 at 26179238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 54021374 - 54021241
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaa---ttaaaacttgccaactgtgtcttgaaaaattc 107  Q
    |||||| | ||| |||| ||| |||||||| ||||||||||||||| |||||||||| ||   ||   |||||||||| || || | |||| ||||||||    
T  54021374 cactatgtgccacaatttaaggaggtgtggttgaaaaatagaaagtaaacaaataaagcaattaaaaattaaaacttgtcagctttatcttaaaaaattc 54021275  T
Q  108 ttgatgctatttttctagagaaataacattttcc 141  Q
    ||||||||||||||||||||||||||||||||||    
T  54021274 ttgatgctatttttctagagaaataacattttcc 54021241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 56 - 143
Target Start/End: Complemental strand, 41497977 - 41497888
Alignment:
Q  56 tgaacaaataaatcatgcaattaaaacttgccaactgtgt--cttgaaaaattcttgatgctatttttctagagaaataacattttccgt 143  Q
    |||||||||||||||||||||||||||||  |||||||||  |||||| |||| |||||||||||||| |||||||||| ||||||||||    
T  41497977 tgaacaaataaatcatgcaattaaaacttatcaactgtgtgtcttgaataatttttgatgctatttttttagagaaatagcattttccgt 41497888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 47281646 - 47281588
Alignment:
Q  26 ttcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaactt 84  Q
    |||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  47281646 ttcaaggaggtgtggttgaaaaataggaagtgaacaaataaatcatgcaattaaaactt 47281588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 52726030 - 52726072
Alignment:
Q  99 gaaaaattcttgatgctatttttctagagaaataacattttcc 141  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  52726030 gaaaaattcttgatgctatttttctagagaaatagcattttcc 52726072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 4098534 - 4098576
Alignment:
Q  95 tcttgaaaaattcttgatgctatttttctagagaaataacatt 137  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||    
T  4098534 tcttgaagaattcttgatgttatttttctagagatataacatt 4098576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 18375543 - 18375585
Alignment:
Q  95 tcttgaaaaattcttgatgctatttttctagagaaataacatt 137  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||    
T  18375543 tcttgaagaattcttgatgttatttttctagagatataacatt 18375585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 4098532 - 4098483
Alignment:
Q  83 ttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaata 132  Q
    ||||||||| |||| || |||||||||  |||||||||||||||||||||    
T  4098532 ttgccaactatgtcgtggaaaattctttgtgctatttttctagagaaata 4098483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 139
Target Start/End: Original strand, 47282226 - 47282259
Alignment:
Q  106 tcttgatgctatttttctagagaaataacatttt 139  Q
    ||||||||||||||||||||||||||| ||||||    
T  47282226 tcttgatgctatttttctagagaaatagcatttt 47282259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 31032826 - 31032696
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||| ||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  31032826 cactatttgccacagttcaaggaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgtcaactgtatcttgaaaaattcttg 31032727  T
Q  111 atgctatttttctagagaaataacattttcc 141  Q
    |||||||||||||||| ||||||||||||||    
T  31032726 atgctatttttctagaaaaataacattttcc 31032696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 1270241 - 1270362
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||| ||| |||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||| |||||||||||||||||||| |||    
T  1270241 cactatttgccacaattcaagaaggtgtggctgaaaaataggaagtgaataaataaatcgtgcaattaaaacttgtcaactgtgtcttgaaaaatttttg 1270340  T
Q  111 atgctatttttctagagaaata 132  Q
    ||||||||||||||||||||||    
T  1270341 atgctatttttctagagaaata 1270362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 11 - 140
Target Start/End: Original strand, 47550861 - 47550990
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||| ||| |||| ||| ||||||| || |||||||| || |||||| |||||||||||||||||||||||||| |||| ||||||||||||||||    
T  47550861 cactatttgccacaatttaaggaggtgtgactaaaaaataggaaatgaacatataaatcatgcaattaaaacttgccagctgtttcttgaaaaattcttg 47550960  T
Q  111 atgctatttttctagagaaataacattttc 140  Q
    ||||||||||||||||||||||||||||||    
T  47550961 atgctatttttctagagaaataacattttc 47550990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 14 - 141
Target Start/End: Original strand, 42480194 - 42480323
Alignment:
Q  14 tatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtg--tcttgaaaaattcttga 111  Q
    ||||||||| |||||||  |||||||||||||||||||||| |||| |||||||| |||||||||||||||||   |||||  |||||||||||||||||    
T  42480194 tatttaccacaattcaatgaggtgtggctgaaaaatagaaaatgaataaataaattatgcaattaaaacttgcatgctgtgtctcttgaaaaattcttga 42480293  T
Q  112 tgctatttttctagagaaataacattttcc 141  Q
    ||||||||||||||||||||||||||||||    
T  42480294 tgctatttttctagagaaataacattttcc 42480323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 9098684 - 9098579
Alignment:
Q  25 attcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttcta 124  Q
    ||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||    
T  9098684 attcaagaaggtgtggctgaataatacgaagtgaacaaataaatcatgcaattaaaacttgtcagctgtgttttgaaaaattcttgatgctatttttcta 9098585  T
Q  125 gagaaa 130  Q
    ||||||    
T  9098584 gagaaa 9098579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 29095651 - 29095530
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||| ||| |||||||| ||||||||||||||||||| ||||||||||| | ||||||||||||||||||| ||||| ||||||||||| || |||    
T  29095651 cactatttgccacaattcaaggaggtgtggctgaaaaataggaagtgaacaaagatatcatgcaattaaaacttggcaactatgtcttgaaaattttttg 29095552  T
Q  111 atgctatttttctagagaaata 132  Q
    ||||||||||||||||||||||    
T  29095551 atgctatttttctagagaaata 29095530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 24 - 141
Target Start/End: Original strand, 34475982 - 34476099
Alignment:
Q  24 aattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttct 123  Q
    |||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||| || || |||||||||||||||||||| ||||||||||    
T  34475982 aattcaaggaggtgtggctgaaaaataggaagtgaacaaatcaatcatgcaattaaaacttgtcagctttgtcttgaaaaattcttgatactatttttct 34476081  T
Q  124 agagaaataacattttcc 141  Q
    ||||||||| | ||||||    
T  34476082 agagaaatagccttttcc 34476099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 16254924 - 16255054
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||| |||||||| ||| ||||||||||||| ||||| ||||||||||||||||||| ||||||||  ||| ||  ||||| ||||||||||||||    
T  16254924 cactatttgccataatttaaggaggtgtggctgaataataggaagtgaacaaataaatcatacaattaaattttgtcagttgtgtattgaaaaattcttg 16255023  T
Q  111 atgctatttttctagagaaataacattttcc 141  Q
    |||||||||||||||||||||| ||||||||    
T  16255024 atgctatttttctagagaaatagcattttcc 16255054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 14 - 141
Target Start/End: Original strand, 20809020 - 20809147
Alignment:
Q  14 tatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatg 113  Q
    ||||| ||| |||||||| || |||||||||||| ||| |||||||| |||||| |||| ||||||||||||||| | || |||||||||||||||||||    
T  20809020 tatttgccacaattcaaggagatgtggctgaaaactaggaagtgaacgaataaaccatgtaattaaaacttgccacccgtatcttgaaaaattcttgatg 20809119  T
Q  114 ctatttttctagagaaataacattttcc 141  Q
    |||||||||||||||||||| |||||||    
T  20809120 ctatttttctagagaaataaaattttcc 20809147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 45010288 - 45010399
Alignment:
Q  30 agaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaa 129  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||| ||| ||  ||||| ||||||||||||| |||||||||||||||||||    
T  45010288 agaaggtgtggctgaaaaataagaagtgaacaaataaatcatgcaattaaaatttgtcagatgtgttttgaaaaattctttatgctatttttctagagaa 45010387  T
Q  130 ataacattttcc 141  Q
    ||||||| ||||    
T  45010388 ataacatcttcc 45010399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 44714934 - 44714807
Alignment:
Q  14 tatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatg 113  Q
    ||||| ||| |||||||  || ||||||||||||||| ||| | || ||||||||||| ||||||||||||||||||| | ||||||||||||||||||     
T  44714934 tatttgccacaattcaacgagatgtggctgaaaaataaaaaataaaaaaataaatcatacaattaaaacttgccaactatatcttgaaaaattcttgata 44714835  T
Q  114 ctatttttctagagaaataacattttcc 141  Q
    ||||||||||||| ||||||||||||||    
T  44714834 ctatttttctagaaaaataacattttcc 44714807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 126
Target Start/End: Complemental strand, 2958820 - 2958710
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||| ||| |||||||| |||||||||||||||||||  |||||||||||||||||||||||||     ||||| |||||||||||||||||||||    
T  2958820 cactatttgccaaaattcaaggaggtgtggctgaaaaatagggagtgaacaaataaatcatgcaatta-----tgccagctgtgtcttgaaaaattcttg 2958726  T
Q  111 atgctatttttctaga 126  Q
    ||| ||||||||||||    
T  2958725 atgttatttttctaga 2958710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 4624438 - 4624543
Alignment:
Q  34 ggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataa 133  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||       || |||||||| ||||||||||||||||||||||||||||||     
T  4624438 ggtgtggctgaaaaataggaagtgaacaaataaatcatgcaattaaaact-------tgagtcttgaataattcttgatgctatttttctagagaaatag 4624530  T
Q  134 cattttccgtcca 146  Q
    |||||||| ||||    
T  4624531 cattttccttcca 4624543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 34808007 - 34808134
Alignment:
Q  12 actatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttga 111  Q
    |||||||| ||||||| ||| ||||||||||||||||||  ||||||| |||||||||||||||||||||||||| |  ||| ||||||||||    | |    
T  34808007 actatttatcataatttaaggaggtgtggctgaaaaatatgaagtgaataaataaatcatgcaattaaaacttgctagttgtctcttgaaaaaaaaatta 34808106  T
Q  112 tgctatttttctagagaaataacatttt 139  Q
    ||||||||||||| ||||||||||||||    
T  34808107 tgctatttttctaaagaaataacatttt 34808134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 41647356 - 41647424
Alignment:
Q  70 atgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattt 138  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41647356 atgcaattaaaacttgtcaactgtgtcttgaaaaattcttgatgctatttttctagagaaatagcattt 41647424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 24135827 - 24135893
Alignment:
Q  15 atttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaa 81  Q
    |||| ||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24135827 atttgccacaattcaaggaggtgtggctgaaaaataggaagtgaacaaataaatcatgcaattaaaa 24135893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 48148881 - 48148939
Alignment:
Q  36 tgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgt 95  Q
    ||||||||||||||| |||||||| || ||||||||||||| || ||||||||| |||||    
T  48148881 tgtggctgaaaaataaaaagtgaataa-taaatcatgcaataaacacttgccaattgtgt 48148939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 4194837 - 4194891
Alignment:
Q  12 actatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataa 66  Q
    |||||||||||||||||||  || | || ||||||||||| ||||||||||||||    
T  4194837 actatttaccataattcaaagagatatgactgaaaaataggaagtgaacaaataa 4194891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 29095675 - 29095717
Alignment:
Q  95 tcttgaaaaattcttgatgctatttttctagagaaataacatt 137  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||    
T  29095675 tcttgaagaattcttgatgttatttttctagagatataacatt 29095717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 31032850 - 31032892
Alignment:
Q  95 tcttgaaaaattcttgatgctatttttctagagaaataacatt 137  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||    
T  31032850 tcttgaagaattcttgatgatatttttctagagatataacatt 31032892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 8e-49; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 13686063 - 13686193
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    ||||| || ||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  13686063 cactacttgccacaattcaaggaggtgtggctgaaaaataggaagtgaacaaataaatcatgcaattaaaacttgccaattgtgtcttaaaaaattcttg 13686162  T
Q  111 atgctatttttctagagaaataacattttcc 141  Q
    |||||||||||||||||||||| ||||||||    
T  13686163 atgctatttttctagagaaatagcattttcc 13686193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 41465028 - 41464902
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||| ||  |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41465028 cactatttgccgcaattcaaggaggtgtggttgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgtcaactgtgtcttgaaaaattcttg 41464929  T
Q  111 atgctatttttctagagaaataacatt 137  Q
    ||| |||||||||||||||||||||||    
T  41464928 atgttatttttctagagaaataacatt 41464902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 24 - 141
Target Start/End: Complemental strand, 28716433 - 28716316
Alignment:
Q  24 aattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttct 123  Q
    |||||||  ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  28716433 aattcaaagaggtgtggctgaaaaataggaagtgaacaaataaataatgcaattaaaacttgccagttgtgtcttgaaaaattcttgatgctatttttct 28716334  T
Q  124 agagaaataacattttcc 141  Q
    ||| ||||||||||||||    
T  28716333 agaaaaataacattttcc 28716316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 25414983 - 25415113
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||| ||| |||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||     
T  25414983 cactatttgccacaattcaaggaggtatggctgaaaaaaagaaagtgaacaaataaatcatgcaattaaaacttatcagctgtgtcttgaaaaattcttt 25415082  T
Q  111 atgctatttttctagagaaataacattttcc 141  Q
    || ||||||||||||||| ||| ||||||||    
T  25415083 atactatttttctagagatatagcattttcc 25415113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 45093278 - 45093148
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||| ||| |||||||| |||| || ||||||||||| |||| ||||| |||||||||||||||||| || |||||||| |||| |||||||||||    
T  45093278 cactatttgccacaattcaaggaggtatgactgaaaaataggaagtaaacaattaaatcatgcaattaaaatttcccaactgtatcttaaaaaattcttg 45093179  T
Q  111 atgctatttttctagagaaataacattttcc 141  Q
    |||||||||||||||||||||||||||||||    
T  45093178 atgctatttttctagagaaataacattttcc 45093148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 3810398 - 3810285
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||| ||| |||||||| ||||||| ||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  3810398 cactatttgccacaattcaaggaggtgtgactgaaaaataagaagtgaacaaataaatcatgcaattaaaacttgccagctgtgtcttgaaaatttcttg 3810299  T
Q  111 atgctatttttcta 124  Q
    ||||||||||||||    
T  3810298 atgctatttttcta 3810285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 19899002 - 19899118
Alignment:
Q  24 aattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttct 123  Q
    |||||||| |||| | |||||||| ||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||    
T  19899002 aattcaaggaggtattgctgaaaattaggaagtgaacaaataaatcatgcaattaaaacttgccagttgtgtcttgaaaaattcgtgatgctatttttct 19899101  T
Q  124 agagaaataacattttc 140  Q
    ||||||||| |||||||    
T  19899102 agagaaatagcattttc 19899118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 14941117 - 14940986
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggct-gaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattctt 109  Q
    |||||||| ||| |||||||  ||||||| || ||||||||  |||||||||||||||||||| |||||||||||||||  |||||||||||||||||||    
T  14941117 cactatttgccacaattcaaagaggtgtgactcgaaaaataagaagtgaacaaataaatcatgaaattaaaacttgccagttgtgtcttgaaaaattctt 14941018  T
Q  110 gatgctatttttctagagaaataacattttcc 141  Q
    ||||||||||||||||||||||| ||||||||    
T  14941017 gatgctatttttctagagaaatagcattttcc 14940986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 35323604 - 35323474
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||| ||| |||||||  |||||||||||||||||| ||| |||||| |||||||||| |||||||||||| |||||||||||  ||||||||||     
T  35323604 cactatttgccacaattcaatgaggtgtggctgaaaaataaaaactgaacatataaatcatgtaattaaaacttgtcaactgtgtctgaaaaaattctta 35323505  T
Q  111 atgctatttttctagagaaataacattttcc 141  Q
    || ||||||||||||||||||||||||||||    
T  35323504 atactatttttctagagaaataacattttcc 35323474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 14 - 141
Target Start/End: Original strand, 28429354 - 28429478
Alignment:
Q  14 tatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatg 113  Q
    ||||| |||||||| ||| ||||||| ||||||||||  ||||||||||||||||||||||||||||||||| ||   ||||| ||||||||||||||||    
T  28429354 tatttgccataatttaaggaggtgtgactgaaaaataagaagtgaacaaataaatcatgcaattaaaacttgtca---gtgtcatgaaaaattcttgatg 28429450  T
Q  114 ctatttttctagagaaataacattttcc 141  Q
    ||||||||||| ||||||| ||||||||    
T  28429451 ctatttttctaaagaaatagcattttcc 28429478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 42263914 - 42264030
Alignment:
Q  24 aattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttct 123  Q
    |||||||| ||||||||||||||||||| || ||||||||||||| |||||||||||||||| |    ||||||||||||| | |||||||||||||| |    
T  42263914 aattcaaggaggtgtggctgaaaaataggaaatgaacaaataaattatgcaattaaaacttgactgtcgtgtcttgaaaaaattttgatgctattttttt 42264013  T
Q  124 agagaaataacattttc 140  Q
    |||||||||||||||||    
T  42264014 agagaaataacattttc 42264030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 35676406 - 35676270
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatg-------caattaaaacttgccaactgtgtcttgaaaa 103  Q
    |||||||| ||| |||||||| ||||||| ||||||||||  |||||||||||||||| |||       ||||||||||||||||  |||||||  ||||    
T  35676406 cactatttgccacaattcaaggaggtgtgactgaaaaatatgaagtgaacaaataaat-atgaagtgaacaattaaaacttgccagttgtgtctaaaaaa 35676308  T
Q  104 attcttgatgctatttttctagagaaataacattttcc 141  Q
    | ||||||||||||||||||||||||||| ||||||||    
T  35676307 aatcttgatgctatttttctagagaaatagcattttcc 35676270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 35 - 141
Target Start/End: Complemental strand, 16058477 - 16058375
Alignment:
Q  35 gtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtctt-gaaaaattcttgatgctatttttctagagaaataa 133  Q
    ||||||||||||||||  ||||||| ||||||||||||||| |||||||||     ||||||||  |||||||||||||||||||||| |||||||||||    
T  16058477 gtgtggctgaaaaatatgaagtgaataaataaatcatgcaaataaaacttg----ttgtgtcttaaaaaaattcttgatgctattttt-tagagaaataa 16058383  T
Q  134 cattttcc 141  Q
     |||||||    
T  16058382 gattttcc 16058375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 36690946 - 36690818
Alignment:
Q  14 tatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaa--attcttga 111  Q
    ||||| ||| |||||||| | | ||||||||||  ||| |||||||||||||||||| | |||||||| ||| || ||||||||||||||  |||||| |    
T  36690946 tatttgccacaattcaaggaagcgtggctgaaag-taggaagtgaacaaataaatcaagtaattaaaatttgtcagctgtgtcttgaaaaatattcttaa 36690848  T
Q  112 tgctatttttctagagaaataacattttcc 141  Q
    || |||||||||| ||||||| ||||||||    
T  36690847 tgttatttttctaaagaaatagcattttcc 36690818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 40126629 - 40126520
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    ||||||||| || |||| |||||| | | | |||||||||| ||||||||||||||||||| ||||||||| |||  | |||| |||| ||||||||| |    
T  40126629 cactatttatcacaatttaagaagatatagttgaaaaataggaagtgaacaaataaatcatacaattaaaatttgtgagctgtatcttaaaaaattctcg 40126530  T
Q  111 atgctatttt 120  Q
    ||||||||||    
T  40126529 atgctatttt 40126520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 29689349 - 29689277
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaact 83  Q
    |||||||| | |||||||||| |||| || ||||||||||| |||||||| ||||||||||||||||||||||    
T  29689349 cactatttgctataattcaaggaggtttgactgaaaaataggaagtgaactaataaatcatgcaattaaaact 29689277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 2752659 - 2752614
Alignment:
Q  96 cttgaaaaattcttgatgctatttttctagagaaataacattttcc 141  Q
    ||||||||||||||||||||||||||||||||||||| || |||||    
T  2752659 cttgaaaaattcttgatgctatttttctagagaaatagcaatttcc 2752614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 24413862 - 24413904
Alignment:
Q  100 aaaaattcttgatgctatttttctagagaaataacattttccg 142  Q
    ||||||| ||||||||||||||||||||||||| |||||||||    
T  24413862 aaaaattattgatgctatttttctagagaaatagcattttccg 24413904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 2752762 - 2752692
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaa 81  Q
    |||||||| ||| |||||||| || | || ||||||||||  ||||||| ||||||||||| |||||||||    
T  2752762 cactatttgccacaattcaaggagatctgactgaaaaataagaagtgaataaataaatcatacaattaaaa 2752692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 13686039 - 13685997
Alignment:
Q  95 tcttgaaaaattcttgatgctatttttctagagaaataacatt 137  Q
    ||||||||||||||||||| |||||||||||||| ||| ||||    
T  13686039 tcttgaaaaattcttgatgttatttttctagagatatagcatt 13685997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 42263877 - 42263835
Alignment:
Q  95 tcttgaaaaattcttgatgctatttttctagagaaataacatt 137  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||    
T  42263877 tcttgaagaattcttgatgttatttttctagagatataacatt 42263835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 3377084 - 3377049
Alignment:
Q  61 aaataaatcatgcaattaaaacttgccaactgtgtct 97  Q
    ||||||||||||||||||||||||| |||||||||||    
T  3377084 aaataaatcatgcaattaaaacttg-caactgtgtct 3377049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 45166296 - 45166424
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||| ||| |||||||| ||| |||||||||||||||  |||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  45166296 cactatttgccacaattcaaggaggcgtggctgaaaaatagggagtggacaaataaatcatgcaattaaaatttgccaactgcgtcttgaaaaattcttg 45166395  T
Q  111 atgctatttttctagagaaataacatttt 139  Q
    |||||||||||||||||||||||||||||    
T  45166396 atgctatttttctagagaaataacatttt 45166424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 521893 - 521763
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||| ||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  521893 cactatttgccacaattcaaggaggtgtggctgaaaaataggaagtgaacaaataaatcatgcaattaaaacttgacaactgtgtcttaaaaaattcttg 521794  T
Q  111 atgctatttttctagagaaataacattttcc 141  Q
    ||| ||||| |||||| ||||| ||||||||    
T  521793 atgatatttgtctagataaatagcattttcc 521763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 38176518 - 38176390
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||| ||  |||||||| ||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  38176518 cactatttgcctcaattcaaggaggtgtggctgaaaaatatgaagtgaacaaataaaacatgcaattaaaacttgccaactgtgtcttgaaaaattctta 38176419  T
Q  111 atgctatttttctagagaaataacatttt 139  Q
    |||||||||||||| ||||||| ||||||    
T  38176418 atgctatttttctaaagaaatatcatttt 38176390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 50613003 - 50612873
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||| ||| |||||||| ||||||| |||||||||| ||||||||||||||||| |||||||||||||||| || |||||| ||||||||||||||    
T  50613003 cactatttgccacaattcaaggaggtgtgactgaaaaatataaagtgaacaaataaattatgcaattaaaacttgtcagctgtgtattgaaaaattcttg 50612904  T
Q  111 atgctatttttctagagaaataacattttcc 141  Q
    ||||| ||||| |||||||||||||||||||    
T  50612903 atgctgtttttatagagaaataacattttcc 50612873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 23643108 - 23642978
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||| ||| |||||||| ||||||| || |||||||| |||||||||||||||| ||| |||||||| ||| || |||||||||||||||||||||    
T  23643108 cactatttgccacaattcaaggaggtgtgactaaaaaataggaagtgaacaaataaattatggaattaaaatttgtcagctgtgtcttgaaaaattcttg 23643009  T
Q  111 atgctatttttctagagaaataacattttcc 141  Q
    |||||||||||||||||||||| ||||||||    
T  23643008 atgctatttttctagagaaatagcattttcc 23642978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 31788375 - 31788505
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||||||| |||||||| |||||||  |||||||||| ||||||||||||||||| |||| |||||||||| ||| ||||||||||||||||||||    
T  31788375 cactatttaccacaattcaaggaggtgtgattgaaaaataggaagtgaacaaataaatcttgcagttaaaacttgtcaattgtgtcttgaaaaattcttg 31788474  T
Q  111 atgctatttttctagagaaataacattttcc 141  Q
    | | ||||||| |||||||||||||||||||    
T  31788475 aagttatttttatagagaaataacattttcc 31788505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 36517584 - 36517714
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||| ||| |||||||| |||||||  | |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36517584 cactatttgccacaattcaaggaggtgtgaataaaaaataggaagtgaacaaataaatcatgcaattaaaacttgccaactgtgttttgaaaaattcttg 36517683  T
Q  111 atgctatttttctagagaaataacattttcc 141  Q
    | | ||||| |||||| ||||| ||||||||    
T  36517684 aagttatttatctagataaatagcattttcc 36517714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 39145321 - 39145451
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||| | | |||||||  |||| || ||||||||||| || |||||||| ||||||| ||||||||||||| |||||||||||||| |||||||||    
T  39145321 cactatttgctacaattcaatgaggtatgactgaaaaataggaaatgaacaaagaaatcatacaattaaaacttgacaactgtgtcttgacaaattcttg 39145420  T
Q  111 atgctatttttctagagaaataacattttcc 141  Q
    |||||||||||||||||||||| ||||||||    
T  39145421 atgctatttttctagagaaatagcattttcc 39145451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 20912237 - 20912350
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    ||||||||  ||||||| ||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||  || || |||||| |||||||||||    
T  20912237 cactatttgtcataatttaaggaggtgtgactgaaaaataggaagtgaacaaataaatcatgcaattaaaacttatcagctatgtctttaaaaattcttg 20912336  T
Q  111 atgctatttttcta 124  Q
    ||||||||||||||    
T  20912337 atgctatttttcta 20912350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 51297154 - 51297022
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaac-tgtgtcttgaaaaattctt 109  Q
    |||||||| ||| ||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||  |||| || ||||||||||| | ||    
T  51297154 cactatttgccacaattcaaaaaggtatgactgaaaaatagaaagtgaacaaataaatcatgcaattaaaatttatcaacttgcgtcttgaaaaaatttt 51297055  T
Q  110 gatgcta-tttttctagagaaataacattttcc 141  Q
    ||||||| ||||| |||||||||||||||||||    
T  51297054 gatgctattttttttagagaaataacattttcc 51297022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 1561384 - 1561283
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||| ||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||| || ||||||||  |||||||||||    
T  1561384 cactatttgccacaattcaaggaggtgtggctgaaaaataggaagtgaacaaataaatcatgcaattgaaacttgtcagctgtgtctgaaaaaattcttg 1561285  T
Q  111 at 112  Q
    ||    
T  1561284 at 1561283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 24 - 141
Target Start/End: Original strand, 52546825 - 52546942
Alignment:
Q  24 aattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttct 123  Q
    |||||||  |||||||  |||||||||| || ||||||||||||| ||||||||||||||||  |  ||||||||| |||||||||||||| ||||||||    
T  52546825 aattcaatgaggtgtgagtgaaaaataggaaatgaacaaataaattatgcaattaaaacttgtaaggtgtgtcttggaaaattcttgatgcaatttttct 52546924  T
Q  124 agagaaataacattttcc 141  Q
    ||||||||| ||||||||    
T  52546925 agagaaatagcattttcc 52546942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 34624605 - 34624486
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||||||| ||||  || | ||||||||||||||||| |||||||||||||||||||||||||||||           | |||| |||||||||||    
T  34624605 cactatttaccacaatttgaggaagtgtggctgaaaaataggaagtgaacaaataaatcatgcaattaaaa-----------tttcttaaaaaattcttg 34624517  T
Q  111 atgctatttttctagagaaataacattttcc 141  Q
    |||||||||||||||||||||||||||||||    
T  34624516 atgctatttttctagagaaataacattttcc 34624486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 22650511 - 22650440
Alignment:
Q  24 aattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgt 95  Q
    |||| ||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||| | ||||||    
T  22650511 aatttaaggaggtgtggctgaaaagtaaaaagtgaacaaataaatcatgcaattaaaacttgcgagctgtgt 22650440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 9496623 - 9496674
Alignment:
Q  34 ggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttg 85  Q
    ||||| ||||||||||||  ||||||||||||||||||||| ||||| ||||    
T  9496623 ggtgttgctgaaaaatagggagtgaacaaataaatcatgcagttaaagcttg 9496674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 38176542 - 38176584
Alignment:
Q  95 tcttgaaaaattcttgatgctatttttctagagaaataacatt 137  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||    
T  38176542 tcttgaagaattcttgatgatatttttctagagatataacatt 38176584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 1561408 - 1561448
Alignment:
Q  95 tcttgaaaaattcttgatgctatttttctagagaaataaca 135  Q
    ||||||| ||||||||||| |||||||||||||| ||||||    
T  1561408 tcttgaagaattcttgatgttatttttctagagatataaca 1561448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 8325457 - 8325497
Alignment:
Q  44 aaaaatagaaagtgaacaaataaatcatgcaattaaaactt 84  Q
    ||||||| ||||| ||||||||||| |||||||||||||||    
T  8325457 aaaaataaaaagtaaacaaataaattatgcaattaaaactt 8325497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 15461641 - 15461685
Alignment:
Q  41 ctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttg 85  Q
    ||||||||||  |||||||||||||||||||||| ||||| ||||    
T  15461641 ctgaaaaataagaagtgaacaaataaatcatgcagttaaagcttg 15461685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 45166270 - 45166230
Alignment:
Q  97 ttgaaaaattcttgatgctatttttctagagaaataacatt 137  Q
    ||||| ||||||||||| |||||||||||||| ||||||||    
T  45166270 ttgaagaattcttgatgttatttttctagagatataacatt 45166230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 37094027 - 37093912
Alignment:
Q  24 aattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttct 123  Q
    |||||||| ||||||| ||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37094027 aattcaaggaggtgtgactgaaaaataggaagtgaacaaataaattatgcaattaaaacttgtcaactgtgtcttgaaaaattcttgatgctatttttct 37093928  T
Q  124 agagaaataacatttt 139  Q
    ||| ||||||||||||    
T  37093927 agaaaaataacatttt 37093912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 4391974 - 4391844
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||| ||| ||| |||||||| || |||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  4391974 cactgtttgccacaattcaaggagctgtggctgaaaaataggaagtgaacaaataaattatgcaattaaaacttgccagctgtgtcttgaaaaattcttg 4391875  T
Q  111 atgctatttttctagagaaataacattttcc 141  Q
    |||||||||||||||||||||  ||||||||    
T  4391874 atgctatttttctagagaaattgcattttcc 4391844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 32891244 - 32891374
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||| ||| |||||||| |||||||||| ||| |||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||    
T  32891244 cactatttgccacaattcaaggaggtgtggctaaaagataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattgttg 32891343  T
Q  111 atgctatttttctagagaaataacattttcc 141  Q
    |||||||||||||||| ||||| ||||||||    
T  32891344 atgctatttttctagataaatagcattttcc 32891374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 12 - 141
Target Start/End: Original strand, 8692579 - 8692708
Alignment:
Q  12 actatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttga 111  Q
    ||||||| ||| |||||||| | ||||||| ||||||||||||||||| ||||||||||||||||||||| ||| || ||||||||||||| ||||||||    
T  8692579 actatttgccacaattcaaggaagtgtggcagaaaaatagaaagtgaataaataaatcatgcaattaaaatttgtcagctgtgtcttgaaagattcttga 8692678  T
Q  112 tgctatttttctagagaaataacattttcc 141  Q
    |||||||||| |||||||||||||||||||    
T  8692679 tgctatttttttagagaaataacattttcc 8692708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 34286663 - 34286793
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||| ||| |||| | ||||||||||||||||||||| || |||||||||||||||||||||||||| ||| ||  |||||||||||||| | |||    
T  34286663 cactatttgccacaattaatgaaggtgtggctgaaaaataggaaatgaacaaataaatcatgcaattaaaatttgtcagttgtgtcttgaaaaaattttg 34286762  T
Q  111 atgctatttttctagagaaataacattttcc 141  Q
    |||||||||||||||||||||||||||||||    
T  34286763 atgctatttttctagagaaataacattttcc 34286793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 36 - 141
Target Start/End: Original strand, 5481447 - 5481552
Alignment:
Q  36 tgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataaca 135  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||| || ||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  5481447 tgtggctgaaaaataaaaagtgaacaaataaatcatgcagttaaaatttaccaactgtgtcttaaaaaattcttgatgctatttttctagagaaataata 5481546  T
Q  136 ttttcc 141  Q
    ||||||    
T  5481547 ttttcc 5481552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 3456822 - 3456949
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||| ||| |||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |   ||||||   |||||||||||    
T  3456822 cactatttgccacaattcaaggaggtgtgactgaaaaataggaagtgaacaaataaatcatgcaattaaaacttgtcggttgtgtc---aaaaattcttg 3456918  T
Q  111 atgctatttttctagagaaataacattttcc 141  Q
    |||||||||||||||| ||||| ||||||||    
T  3456919 atgctatttttctagaaaaatagcattttcc 3456949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 228093 - 228223
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||||||| |||||||| ||||||| ||||||| ||||||||||||||||| |||||||||||||||||||  |  |||||||||||||| | ||     
T  228093 cactatttaccacaattcaaggaggtgtgactgaaaagtagaaagtgaacaaatatatcatgcaattaaaacttgtaagttgtgtcttgaaaaaatttta 228192  T
Q  111 atgctatttttctagagaaataacattttcc 141  Q
    ||| |||||||||||| ||||| ||||||||    
T  228193 atgttatttttctagaaaaatagcattttcc 228223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 40925918 - 40926015
Alignment:
Q  24 aattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctattttt 121  Q
    |||||||  ||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||  |||||||||||||||||||||||||| ||||    
T  40925918 aattcaaagaggtgtggctgaaaaataggaagtgaacaaataaatcatacaattaaaacttgtcagatgtgtcttgaaaaattcttgatgctactttt 40926015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 28434271 - 28434374
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||||||| |||| |||||| |||| ||| |||||||||| |||| ||||||||||||||||||||||| || |||||| |||  |||||||||||    
T  28434271 cactatttaccacaatttaagaagatgtgactgtaaaatagaaaatgaataaataaatcatgcaattaaaactcgctaactgtatctaaaaaaattcttg 28434370  T
Q  111 atgc 114  Q
    ||||    
T  28434371 atgc 28434374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 6614367 - 6614289
Alignment:
Q  19 accataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtct 97  Q
    |||| |||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||    
T  6614367 accacaattcaaggaggtgtgcctgaaaaataggaagtgaacaaataaatcatgcaattaaaacttgtcgactgtgtct 6614289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 31644721 - 31644812
Alignment:
Q  36 tgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaa--ctgtgtcttgaaaaattcttgatgctatttttctag 125  Q
    ||||| |||||||||| ||||||||||||||| |||||||||||||||| ||||   ||||||||| |||||||||||| ||||||||||||    
T  31644721 tgtggttgaaaaataggaagtgaacaaataaaccatgcaattaaaacttaccaattgtgtgtcttgcaaaattcttgatactatttttctag 31644812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 38614309 - 38614231
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaa 89  Q
    ||||| || ||| ||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||| ||||    
T  38614309 cactaattgccacaattcaagaagatgtggctgaaaaataggaagtaaacaaataaatcatgcaattaaaacttaccaa 38614231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 11739348 - 11739270
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaa 89  Q
    |||| ||| ||| |||||||| ||||||||||||||||||| | |||||||||||||| ||||||||||||||| ||||    
T  11739348 cactgtttgccacaattcaaggaggtgtggctgaaaaataggaggtgaacaaataaattatgcaattaaaacttcccaa 11739270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 29223533 - 29223607
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttg 85  Q
    |||||||| ||| |||||||| ||||||| ||||||||||  ||||| |||||||||||||||||||||||||||    
T  29223533 cactatttgccacaattcaaggaggtgtgactgaaaaataagaagtgtacaaataaatcatgcaattaaaacttg 29223607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 42148957 - 42149030
Alignment:
Q  68 tcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 141  Q
    |||||||||||||| ||  ||  |||||||||||||||||||||| ||||||||||||||||||| | ||||||    
T  42148957 tcatgcaattaaaatttatcagttgtgtcttgaaaaattcttgatactatttttctagagaaatagcgttttcc 42149030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 43141563 - 43141519
Alignment:
Q  97 ttgaaaaattcttgatgctatttttctagagaaataacattttcc 141  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  43141563 ttgaagaattcttgatgctatttttctagagaaataacattttcc 43141519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 35672403 - 35672345
Alignment:
Q  47 aatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaat 105  Q
    ||||| ||||||||||||||||||||||||||||| ||  |||||||||||| ||||||    
T  35672403 aataggaagtgaacaaataaatcatgcaattaaaatttatcaactgtgtcttcaaaaat 35672345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 102
Target Start/End: Complemental strand, 41326564 - 41326486
Alignment:
Q  24 aattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaa 102  Q
    |||||||| ||||||||||||||||||| |||| |||||||| |  ||||||| || ||||||||||||| ||| ||||    
T  41326564 aattcaaggaggtgtggctgaaaaataggaagtaaacaaatacacgatgcaataaacacttgccaactgtatctagaaa 41326486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 16517016 - 16516963
Alignment:
Q  40 gctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgt 93  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||||||| ||||    
T  16517016 gctgaataatagagagtgaacaaataaatcatgaaattaaaacttgccagctgt 16516963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 4391998 - 4392041
Alignment:
Q  95 tcttgaaaaattcttgatgctatttttctagagaaataacattt 138  Q
    ||||||| ||||||||||| |||||||||||||| |||||||||    
T  4391998 tcttgaagaattcttgatgttatttttctagagatataacattt 4392041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 228069 - 228027
Alignment:
Q  95 tcttgaaaaattcttgatgctatttttctagagaaataacatt 137  Q
    ||||||||||||||||||| |||||||||||||| ||| ||||    
T  228069 tcttgaaaaattcttgatgttatttttctagagatatatcatt 228027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 8692554 - 8692512
Alignment:
Q  95 tcttgaaaaattcttgatgctatttttctagagaaataacatt 137  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||    
T  8692554 tcttgaagaattcttgatgttatttttctagagatataacatt 8692512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 32891220 - 32891178
Alignment:
Q  95 tcttgaaaaattcttgatgctatttttctagagaaataacatt 137  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||    
T  32891220 tcttgaagaattcttgatgttatttttctagagatataacatt 32891178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 23992079 - 23991949
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||| ||| |||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||  ||||||||||||||||||||    
T  23992079 cactatttgccacaattcaaggaggtgtggctgaaaaatagaaagtgaacaaaaatatcatgcaattaaaacttgtcagttgtgtcttgaaaaattcttg 23991980  T
Q  111 atgctatttttctagagaaataacattttcc 141  Q
    || |||| |||||||||||||| ||||||||    
T  23991979 atactatgtttctagagaaatagcattttcc 23991949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 27425879 - 27425773
Alignment:
Q  14 tatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatg 113  Q
    ||||| ||| |||||||| || ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27425879 tatttgccacaattcaaggagttgtggttgaaaaataggaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattgttgatg 27425780  T
Q  114 ctatttt 120  Q
    |||||||    
T  27425779 ctatttt 27425773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 42195447 - 42195577
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||||||| |||||||| ||||||| ||||||||||   |||||||||||||||||||||||||||||||   |  ||| |||| |||||||||||    
T  42195447 cactatttaccacaattcaaggaggtgtgtctgaaaaataaggagtgaacaaataaatcatgcaattaaaactttttagttgtatcttaaaaaattcttg 42195546  T
Q  111 atgctatttttctagagaaataacattttcc 141  Q
    ||| |||||||||||||||||||||||||||    
T  42195547 atgttatttttctagagaaataacattttcc 42195577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 8307613 - 8307723
Alignment:
Q  32 aaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaa-ttcttgatgctatttttctagagaaa 130  Q
    ||||||||||| |||||||| |||||||||||||||||||||| |||||| ||||||  |||||||||||||| || | |||||||||||||| ||||||    
T  8307613 aaggtgtggctcaaaaataggaagtgaacaaataaatcatgcagttaaaatttgccagttgtgtcttgaaaaatttgtcgatgctatttttcttgagaaa 8307712  T
Q  131 taacattttcc 141  Q
    || ||||||||    
T  8307713 tatcattttcc 8307723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 22326929 - 22327001
Alignment:
Q  12 actatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaactt 84  Q
    ||||||| ||| |||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22326929 actatttgccacaattcagggaggtgtgactgaaaaatagaaagtgaacaaataaatcatgcaattaaaactt 22327001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 17611915 - 17612005
Alignment:
Q  14 tatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaa 104  Q
    ||||| ||| |||||||| || ||||||| |||||||| ||||||| ||||||||||| ||||||||||||| ||  |||||||| |||||    
T  17611915 tatttgccacaattcaaggagatgtggctaaaaaataggaagtgaataaataaatcatacaattaaaacttgtcagttgtgtcttaaaaaa 17612005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 141
Target Start/End: Original strand, 25686436 - 25686563
Alignment:
Q  12 actatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaat---catgcaattaaaacttgccaactgtgtcttgaaaaattct 108  Q
    ||||||||||| |||| ||| ||||||||||| ||||||| |||| ||||||| |||   ||| |||| |||||||| | |     ||||||||||||||    
T  25686436 actatttaccacaatttaaggaggtgtggctggaaaataggaagtaaacaaattaataatcatacaatcaaaacttgtcga-----tcttgaaaaattct 25686530  T
Q  109 tgatgctatttttctagagaaataacattttcc 141  Q
    | || |||||||| || ||||||||||||||||    
T  25686531 taatactatttttgtaaagaaataacattttcc 25686563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 10485300 - 10485369
Alignment:
Q  34 ggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaa 103  Q
    ||||| |||||||||||   ||||||| ||||||||||||  |||||||||| || |||||||| |||||    
T  10485300 ggtgttgctgaaaaataaggagtgaacgaataaatcatgctgttaaaacttgacagctgtgtctggaaaa 10485369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 7646903 - 7646773
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||| ||| |||||||| | ||||| ||||||||||| || |||||||||||||||||||||||||||||||||  ||||||||||||||||| ||    
T  7646903 cactatttgccacaattcaaggatgtgtgactgaaaaataggaaatgaacaaataaatcatgcaattaaaacttgccagatgtgtcttgaaaaattcctg 7646804  T
Q  111 atgctatttttctagagaaataacattttcc 141  Q
    || ||||||||||||||||||| ||||||||    
T  7646803 atactatttttctagagaaatagcattttcc 7646773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 25935591 - 25935694
Alignment:
Q  24 aattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttct 123  Q
    |||| ||| |||||||||||||||||||||||||||  ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25935591 aatttaaggaggtgtggctgaaaaatagaaagtgaaagaataaatcatgtaattaaaacttgccagctgtgtcttgaaaaattcttgatgctatttttct 25935690  T
Q  124 agag 127  Q
    ||||    
T  25935691 agag 25935694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 29487644 - 29487541
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttg 110  Q
    |||||||| ||| |||| ||  |||||||||||||||||||  ||||||||||||||||||||||| || |||| |||||||||||| ||||||||||||    
T  29487644 cactatttgccacaattaaatgaggtgtggctgaaaaatagggagtgaacaaataaatcatgcaatcaacacttaccaactgtgtctggaaaaattcttg 29487545  T
Q  111 atgc 114  Q
    ||||    
T  29487544 atgc 29487541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 17366934 - 17367016
Alignment:
Q  53 aagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 141  Q
    ||||||||||||||  ||||||||||||||||||     ||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  17366934 aagtgaacaaataatgcatgcaattaaaacttgc-----gtgtcttgaaaaatt-ttgatgctatttttctagagaaatagcattttcc 17367016  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 12607189 - 12607123
Alignment:
Q  11 cactatttaccataattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaatt 77  Q
    |||||||| ||| |||| ||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  12607189 cactatttgccacaatttaaggaggtgtgactgaaaaatagaaagtgaacaaataaatcatgcaatt 12607123  T

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Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 12607107 - 12607030
Alignment:
Q  65 aaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctattttt-ctagagaaataacattttcc 141  Q
    ||||||||||||||||||||  ||| |||||||| ||||||||||||| |||||||| ||||||||| ||||||||||    
T  12607107 aaatcatgcaattaaaacttatcaattgtgtcttaaaaaattcttgatactatttttcctagagaaacaacattttcc 12607030  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 28898482 - 28898438
Alignment:
Q  40 gctgaaaaatagaaagtgaacaaataaatcatgcaattaaaactt 84  Q
    |||| |||||||  |||||||||||||||||||||||||||||||    
T  28898482 gctgtaaaatagggagtgaacaaataaatcatgcaattaaaactt 28898438  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 141
Target Start/End: Original strand, 3835318 - 3835348
Alignment:
Q  111 atgctatttttctagagaaataacattttcc 141  Q
    |||||||||||||||||||||||||||||||    
T  3835318 atgctatttttctagagaaataacattttcc 3835348  T

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Target: scaffold0002 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 492749 - 492865
Alignment:
Q  24 aattcaagaaggtgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttct 123  Q
    |||||||| ||||||||||||||||||| || ||||||||||||| |||||||||||||||| |    ||||||||||||| | |||||||||||||| |    
T  492749 aattcaaggaggtgtggctgaaaaataggaaatgaacaaataaattatgcaattaaaacttgactgtcgtgtcttgaaaaaattttgatgctattttttt 492848  T
Q  124 agagaaataacattttc 140  Q
    |||||||||||||||||    
T  492849 agagaaataacattttc 492865  T

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Target: scaffold0002; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 492712 - 492670
Alignment:
Q  95 tcttgaaaaattcttgatgctatttttctagagaaataacatt 137  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||    
T  492712 tcttgaagaattcttgatgttatttttctagagatataacatt 492670  T

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Target: scaffold0339 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 13378 - 13442
Alignment:
Q  76 ttaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 141  Q
    ||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  13378 ttaaaacttaccatctgtgtcttgaaaa-ttcttgatgctatttttctagagaaatatcattttcc 13442  T

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Target: scaffold0071 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 551 - 507
Alignment:
Q  41 ctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttg 85  Q
    ||||||||||  |||||||||||||||||||||| ||||| ||||    
T  551 ctgaaaaataagaagtgaacaaataaatcatgcagttaaagcttg 507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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