View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10818_low_17 (Length: 338)
Name: NF10818_low_17
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10818_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 29941289 - 29941591
Alignment:
| Q |
18 |
acacatgacggtacttttacagaatatacacgtatatgcatcgtaaacacagtcacaaacagttgtaaggagagtgacagagaccaaacaagatatggtg |
117 |
Q |
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| T |
29941289 |
acacatgacggtacttttacagaatatacacgtatatgcatcgtaaacacagtcacaaacagttgtaa---------cagagaccaaacaagatatggtg |
29941379 |
T |
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| Q |
118 |
tgtgatatgaagctgaaaacttttcattgaccgcaaataaataataggttgaaactttatgtttttaacaggtacaattcaatctccaactgtcagagaa |
217 |
Q |
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| T |
29941380 |
tgtgatatgaagctgaaaactttgcattgaccgcaaataaataataggttgaaactttatgtttttaacaggtacaattcaatctccaactgtcagagaa |
29941479 |
T |
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| Q |
218 |
ggagcaagttgatagggcaaaggttgtgcttccttttgaacaccaaggtatgatatagatttgtaattgagccatttcttacggtgtttaaatcatatat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29941480 |
ggagcaagttgatagggcaaaggttgtgcttccttttgaacaccaaggtatgatatagatttgtaattgagccatttcttacggtgtttaaatcatatat |
29941579 |
T |
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| Q |
318 |
gtcctcctatgc |
329 |
Q |
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|||||| ||||| |
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| T |
29941580 |
gtcctcttatgc |
29941591 |
T |
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