View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10818_low_18 (Length: 335)
Name: NF10818_low_18
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10818_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 16 - 325
Target Start/End: Original strand, 52454227 - 52454546
Alignment:
| Q |
16 |
acatatgtagtgtggccaatggggattcaatgcatttctcttctctacattaatt---------------tcatttcatgggtttcatgtataagtttcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52454227 |
acatatgtagtgtggccaatggggattcaatgcatttctcttctctacattaatttcacgagccaaaatttcatttcatgggtttcatgtataagtttcc |
52454326 |
T |
|
| Q |
101 |
gttattccgtgagtggttagttgtaagacgcaactcaacgtaaggtcctccaatgaccaatccatcaactttctcattttgttctttccgacttcctcgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52454327 |
gttattccgtgagtggttagttgtaagacgcaactcaacgtaatgtcctccaatgaccaatccatcaactttctcattttgttctttccgacttcctcgt |
52454426 |
T |
|
| Q |
201 |
tctgcttctttttgtgaattacatgtcaatttggataatttcacattcctagtgactgaatatcagcttttacttttagccttttggagttctccttttc |
300 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
52454427 |
tctgcttctttttgtga-----atgtcaatttggataatttcacattcctagtgactgaatatcagcttttacttttagtcttttggagttctccttttc |
52454521 |
T |
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| Q |
301 |
atgactccaataatttattactcct |
325 |
Q |
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||||||||||||||| ||||||||| |
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| T |
52454522 |
atgactccaataattgattactcct |
52454546 |
T |
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