View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10818_low_19 (Length: 325)
Name: NF10818_low_19
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10818_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 11 - 309
Target Start/End: Complemental strand, 38170127 - 38169826
Alignment:
| Q |
11 |
caaaggatgattacattcaatggttggattcaaaggatgaaaagtctgttgtttatgtttcatttggtactcttgctgttttgtctaaaagacaaatgga |
110 |
Q |
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| T |
38170127 |
caaaggatgattacattcaatggttggattcaaaggatgaaaagtctgttgtttatgtttcatttggtactcttgctgttttgtctaaaagacaaatgga |
38170028 |
T |
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| Q |
111 |
ggaaattgcacgtgccttgttggattctggattttctttcttgtgggttattagagataaaaaattacaacaacaaaaagaa---gaagttgatgatgat |
207 |
Q |
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| T |
38170027 |
ggaaattgcacgtgccttgttggattctggattttctttcttgtgggttattagagataaaaaattacaacaacaaaaagaagaagaagttgatgatgat |
38169928 |
T |
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| Q |
208 |
gagctgagttgtagagaggaacttgagaataatatgaatgggaagataataaaatggtgtagtcaggtggaggttttgtcgcaccgttctttgggttgtt |
307 |
Q |
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| T |
38169927 |
gagctgagttgtagagaggaacttgagaataatatgaatgggaagatagtaaaatggtgtagtcaggtggaggttttgtcgcaccgttctttgggttgtt |
38169828 |
T |
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| Q |
308 |
tt |
309 |
Q |
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| T |
38169827 |
tt |
38169826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 20 - 309
Target Start/End: Complemental strand, 38184601 - 38184309
Alignment:
| Q |
20 |
attacattcaatggttggattcaaaggatgaaaagtctgttgtttatgtttcatttggtactcttgctgttttgtctaaaagacaaatggaggaaattgc |
119 |
Q |
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| T |
38184601 |
attactttgaatggttggattcaaaggatgaatcgtctgtggtttatgtttcatttggtactcttgctattttgtccaagagacaaatggaggaaattgg |
38184502 |
T |
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| Q |
120 |
acgtgccttgttggattctggattttctttcttgtgggttattagagat-aaaaaatta--caacaacaaaaagaagaagttgatgatgatgagctgagt |
216 |
Q |
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| T |
38184501 |
acgtgcgttgttggattctggattttatttcttgtgggtaattagagatgaaaaagttatgcaacaaaaagaagaggagggtgatagtgatgagttaagt |
38184402 |
T |
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| Q |
217 |
tgtagagaggaacttgagaataatatgaatgggaagataataaaatggtgtagtcaggtggaggttttgtcgcaccgttctttgggttgtttt |
309 |
Q |
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| T |
38184401 |
tgtagagaggaacttgagaggaatgttaatgggaagatagtgaaatggtgtagtcaggtggaggttttgtcgcaccgttctttgggttgtttt |
38184309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 20 - 309
Target Start/End: Complemental strand, 38179932 - 38179640
Alignment:
| Q |
20 |
attacattcaatggttggattcaaaggatgaaaagtctgttgtttatgtttcatttggtactcttgctgttttgtctaaaagacaaatggaggaaattgc |
119 |
Q |
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| T |
38179932 |
attactttgaatggttggattcaaaggatgaatcgtctgtggtttatgtttcatttggtactcttgctattttgtccaatagacaaatggaggaaattgg |
38179833 |
T |
|
| Q |
120 |
acgtgccttgttggattctggattttctttcttgtgggttattagagat-aaaaaatta--caacaacaaaaagaagaagttgatgatgatgagctgagt |
216 |
Q |
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| T |
38179832 |
acgtgcgttgttggattctggattttatttcttgtgggtaattagagatgaaaaagttatgcaacaaaaagaagaggagggtgatagtgatgagttaagt |
38179733 |
T |
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| Q |
217 |
tgtagagaggaacttgagaataatatgaatgggaagataataaaatggtgtagtcaggtggaggttttgtcgcaccgttctttgggttgtttt |
309 |
Q |
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| T |
38179732 |
tgtagagaggagcttgagaggaatgttaatgggaagatagtgaaatggtgtagtcaggtggaggttttgtcgcaccgttctttaggttgtttt |
38179640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 55 - 164
Target Start/End: Original strand, 35053885 - 35053994
Alignment:
| Q |
55 |
tctgttgtttatgtttcatttggtactcttgctgttttgtctaaaagacaaatggaggaaattgcacgtgccttgttggattctggattttctttcttgt |
154 |
Q |
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| T |
35053885 |
tctgtggtttatgtttcatttggtagttactttgttttgtctgagagacaaagggaggaaattgcacatgctttgttggattgtggatttccattcttgt |
35053984 |
T |
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| Q |
155 |
gggttattag |
164 |
Q |
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| T |
35053985 |
gggttcttag |
35053994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 167
Target Start/End: Original strand, 35060641 - 35060750
Alignment:
| Q |
58 |
gttgtttatgtttcatttggtactcttgctgttttgtctaaaagacaaatggaggaaattgcacgtgccttgttggattctggattttctttcttgtggg |
157 |
Q |
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|||||||||||||| ||||||| | |||||||||| | |||||| |||||||||||| |||| |||||| ||| ||| ||||| |||||||||| |
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| T |
35060641 |
gttgtttatgtttcttttggtagttactttgttttgtctgagcgacaaacagaggaaattgcaagtgcgttgttgaattgtgggttttcattcttgtggg |
35060740 |
T |
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| Q |
158 |
ttattagaga |
167 |
Q |
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| || ||||| |
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| T |
35060741 |
tcatgagaga |
35060750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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