View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10818_low_21 (Length: 321)

Name: NF10818_low_21
Description: NF10818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10818_low_21
NF10818_low_21
[»] chr3 (1 HSPs)
chr3 (19-314)||(49224029-49224318)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 49224318 - 49224029
Alignment:
Q  19 ttggtgaaatagcacctgaagtgagttgtgacaaggaagaagaagtggaggagtgacatagtgaggaggagaaaaatgtgagtagaaaacaaaaacgaag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49224318 ttggtgaaatagcacctgaagtgagttgtgacaaggaagaagaagtggaggagtgacatagtgaggaggagaaaaatgtgagtagaaaacaaaaacgaag 49224219  T
Q  119 taaccagtaactagaaaacattatgttgtgagagtaagaaacatgaagcggagaaagagtggtgnnnnnnnnnnnnnnnnnggagagaaagaggagagag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||    
T  49224218 taaccagtaactagaaaacattatgttgtgagagtaagaaacatgaagcggagaaagagtggtg-----tgtgtgtgtgtgggagagaaagaggagagag 49224124  T
Q  219 tgtgaacagaacagaacagagtttaactgttggaaaatatgaggtctccaagaccagtgtttgacaatgacattaacctcgttcctctctctgctt 314  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  49224123 tgtgaacagaacagaacagagtttaactgttgg-aaatatgaggtctccaagaccagtgtttgacaatgacattaacctcgttcctctcactgctt 49224029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University